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* Fix pytest on travis
* Added SMTP_HOST and SMTP_PORT to the docker-composes
* No more fake files
* Fixed webserver<->storage specs
* File Picker get nodeModel and projectId
* Get MyDocuments
* Trying to upload files
* fix swarm config for storage
* Increased PLATFORM_VERSION to 3.19
* Revert "Increased PLATFORM_VERSION to 3.19"
This reverts commit cd37313.
* Increased PLATFORM_VERSION to 3.19
* upgraded openapi code generator
re-generated storage client sdk
* go back to 3.2.3
* renamed package name
* fixed crash when no datcore present
* fixed openapi definition for getting locations - was not returning enveloped response
* improved script to automatically remove output.yaml
* modified openapi to specify it actually returns envelopes
re-generated client
* created sample file for testing client
* fixed usage of upload link
* defines link as required
* removed python notebook
* removed log
* changed dependency from s3wrapper to storage client sdk
* make use of Path to ensure correct /
* change name of package to follow conventions
* renamed requirements for production
* code cleanup
* added necesary config entries
* moved includes to fixtures to top'level conftest
* pylint
* fixed storage setup script to copy the openapi correctly
* fixed dependencies to servicelib
* fixed naming
* added logs
* added exception for storage connection error
* return value of location id is an integer not a number
* strip " from none
* added fixture to start storage servicemoved minio out of the docker stack so that pre-signed urls are correctmade filemanager asynctest filemanager complete and functional
* filemanager tests are passingadded exceptions to handle storage server errors
* added configuration for store and bucket
* moved fixtures to conftest
added teardowns for DB
added external minio to get functional pre-signed keys
* added new way of creating file id
* parts of nodeports test passing
made parts async
* added more helpers functions for testing
* fixes the warnings regarding ssl
* refactoring
fixed file_uuid fixture
* fixed await missing
* refactoring storage fixture
fixed issues
* missing files
* fixed tests for getting files and values from previous nodes
things are more flexible
* nodeports tests are passing again
* download using async library aiofiles
* pylint
* code cleanup
* pylint
* updated code generator to latest version
* removed usage of prance to resolve openapi as this is now fixed by fixing the openapi specifications
updated the storage sdk client code
removed wrong nullable entry where a non null response is expected
set openapi schema file to include the components and schemas namespaces to fix validation error about unknown schema
fixed all references by using / after the #
* changed image to use for testing
* replace the minio fixture with the new external to the docker-compose stack
* fixed endpoint without scheme
* storage build for tests
* update docker-compose on travis
* fix issue with not creating parent paths
* pylint
* fixed issue with windows invalid path
* pylint
* Little fixes (#9)
* update docker-compose on travis
* fix issue with not creating parent paths
* pylint
* fixed issue with windows invalid path
* pylint
* fix deps for mock
* try to fix travis hang
* pylint
* try to satisfy travis with log output
* fixed dependencies of sidecar
* another travis test
* fixed dependencies
* re-arranging nodeports
* re-arranged test folder
* fixed installation dependencies
* fixed imports
* re-arranged nodeports for simplicity
* use the latest minio only
* removed the timeout
* wrap async calls in sidecar
* change configuration to STORAGE_ENDPOINT
* Slightly change API
* updated the client code
* pylint
* adapted node ports to new storage api
* fixed setting up of storage enpoint in test
* fixed dependencies. without this requirements, the pdb debugger does not stop
* makefile cleanup
* adapted to new API
* fixes return value
* added mark as pytest asyncio
* set as internal port
* pylint
* only build storage
* export DOCKER_GID before building storage
* wrong env
* fixes tests
* Revert back to old api
* Remove unused field
* FakeData updated to new data structure
* minor
* presignedURL request fixed
* minor
* minor
* cleanup
* updated storage client sdk
* reverted storage api
* mark asyncio tests as async
* removed usage of psycopg2
* remove location from fileuuid
* Merge sandereggs changes
* removing SIMCORE_PIPELINE_ID
* location name is not part of file ID anymore
* fix issues with openapi files
* Forgot those
* refactoring
* allow to also change inputs
* added storage to the devel environment
added STORAGE_ENDPOINT to the config variable
* simplified notebook client
* code refactoring
* renamed
* Fix rerouting to storage
* fixed typo
* renamed folder
* added custom.js to notebook to prevent opening in a new tab
* yaml, we said yAml!!
* user id needs to be passed by the director
* only allow doing stuff in the notebooks folder
* Remove bucket name from file_uuid. It is already defined by the location_id
* Make api for copy more clear
* Make api for copy more cleard-s
* improved theming
* added comments
* Implements copy datcore->s3
* removed bucket from file id
* minor
* try pytest fold
* updated director api to pass user id
* re-generated director server stubs
* refactoring of producer
pass user id to dynamic services
* re-generated director client sdk code
* fixed typos, variable checks
* datcore fakedata updated
* registry proxy is now async
* producer now async
* handlers now using async
* eslint
* fix test
* Adds test for file_uuid creator
* fixed configuration of director sdk
* ISSUE: fixed regular expression in generated sdk code
* Squash from PR#324 webserver uses apihub
Squashed commit of the following:
commit eb33599
Merge: a715899f7eec98
Author: Pedro Crespo <[email protected]>
Date: Wed Nov 14 11:41:20 2018 +0100
Bad merge
Conflicts:
services/director/requirements/base.txt
commit a715899
Merge: 0806917b1f7ad9
Author: Pedro Crespo <[email protected]>
Date: Wed Nov 14 11:36:07 2018 +0100
Merge branch 'is309/webserver-uses-apihub' of github.com:pcrespov/osparc-simcore into is309/webserver-uses-apihub
commit f7eec98
Merge: 0806917b1f7ad9
Author: Pedro Crespo <[email protected]>
Date: Wed Nov 14 11:36:07 2018 +0100
Merge branch 'is309/webserver-uses-apihub' of github.com:pcrespov/osparc-simcore into is309/webserver-uses-apihub
commit 0806917
Merge: 89563a3ed07bfd
Author: Pedro Crespo <[email protected]>
Date: Wed Nov 14 11:35:25 2018 +0100
Merge branch 'master' into is309/webserver-uses-apihub
commit ed07bfd
Merge: 0156ec8c258483
Author: Pedro Crespo <[email protected]>
Date: Wed Nov 14 11:31:37 2018 +0100
Merge remote-tracking branch 'upstream/master'
commit c258483
Author: Tobias Oetiker <[email protected]>
Date: Wed Nov 14 11:29:25 2018 +0100
Build Environment Fixes (#314)
* make swarm work on osx
* use compose to create input for docker stack
* have a separate target for launching the qxbuild
* do NOT put explicit dns into the compose file!!!
rather make sure the /etc/resolve.conf on the host where docker is
running is setup correctly!
* do not rely on boot.sh exec permissions when starting sidecar
* allow override of REGISTRY_URL from .env
* better targets for fontent dev
* Working Makefile for PowerShell
commit b1f7ad9
Merge: 89563a3ff0ac55
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 22:11:36 2018 +0100
Merge branch 'master' into is309/webserver-uses-apihub
commit 0156ec8
Merge: e71ed59ff0ac55
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 21:31:06 2018 +0100
Merge remote-tracking branch 'upstream/master'
commit 89563a3
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 19:26:45 2018 +0100
Fixes retrieving openapi to webserver.
commit c166bc0
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 18:08:39 2018 +0100
Fixes makefile filter (see previous commit)
Removed deprecated modules from merge
Fixed container_environ fixture
Added +x to entrypoint.sh otherwise container does not have execution permissions
commit 05d5423
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 17:42:45 2018 +0100
Fixes bad merge in test_reverser_proxy.
Disabled web/server pylint from makefile since test_package has a linter test and single-file pylint checks
produces false positives with relative imports
commit 63df90c
Merge: bd48b1ee71ed59
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 17:29:43 2018 +0100
Merge branch 'master' into is309/webserver-uses-apihub
commit e71ed59
Merge: 5320cef2fbeba2
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 17:27:33 2018 +0100
Merge remote-tracking branch 'upstream/master'
commit bd48b1e
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 17:25:09 2018 +0100
Fixes login tests. Added new variable in config
commit f85a452
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 17:19:29 2018 +0100
Replaced main.disable_services by "enabled" flags in every service
commit 376f652
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 16:40:25 2018 +0100
Fixes enveloped schemas to have null error.
Modifies the test_conventions... to adapt to new criteria
commit c034676
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 16:31:26 2018 +0100
Added custom variables (OSPARC_SIMCORE_REPO_ROOTDIR) for the config file
Fixes config folder key
commit f1a0a42
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 13:35:42 2018 +0100
Fixed linter error
commit 5161825
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 12:01:37 2018 +0100
fixes on schema my.yaml test failures
commit 0fbcd81
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 11:38:58 2018 +0100
Removed deprecated tests
commit c774d67
Merge: 1df73de359a12c
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 11:35:52 2018 +0100
Merge branch 'is309/webserver-uses-apihub' of github.com:pcrespov/osparc-simcore into is309/webserver-uses-apihub
commit 359a12c
Merge: 6b35214ff41cf4
Author: Pedro Crespo <[email protected]>
Date: Tue Nov 13 11:32:42 2018 +0100
Merge branch 'master' into is309/webserver-uses-apihub
commit 1df73de
Merge: fec4dd36b35214
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 16:49:09 2018 +0100
Merge branch 'is309/webserver-uses-apihub' of github.com:pcrespov/osparc-simcore into is309/webserver-uses-apihub
commit 6b35214
Author: Pedro Crespo-Valero <[email protected]>
Date: Mon Nov 12 16:01:00 2018 +0100
complement previous commit
commit 352fc5e
Author: Pedro Crespo-Valero <[email protected]>
Date: Mon Nov 12 15:58:35 2018 +0100
Upgrade requests to version 2.20.0 to solve vulnerability alarm
commit 19c7596
Merge: 5746dd5f51d68b
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 15:56:31 2018 +0100
Merge branch 'master' into is309/webserver-uses-apihub
commit 5746dd5
Author: Pedro Crespo-Valero <[email protected]>
Date: Mon Nov 12 15:46:56 2018 +0100
Removed resouces_keys
commit fec4dd3
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 15:25:04 2018 +0100
Fixes login ests
commit 26845b1
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 15:13:57 2018 +0100
Removed application_keys.py
commit b3d7d9c
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 15:13:57 2018 +0100
Removed application_keys.py
commit 984c9b8
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 15:09:59 2018 +0100
Cleanup rest. test_rest running
commit 4597c24
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 12:16:07 2018 +0100
Gathered all director subsystem's modules under a folder
commit a815a3e
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 11:58:46 2018 +0100
Renamed comp_backend as computation
Minor
commit 0ff6c01
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 11:57:24 2018 +0100
Split sockets subsystem into setup and handlers
Added s3 subsystem
commit 5098583
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 10:55:20 2018 +0100
Adapted configurations to latest schema.
Added environs to docker-compose and removed from .env-devel hosts and ports (should be hard-coded in docker-compose)
commit cff674b
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 12 10:54:54 2018 +0100
Synced some requirements
commit de4f9dc
Author: Pedro Crespo <[email protected]>
Date: Sat Nov 10 21:21:28 2018 +0100
- every subsystem defines its own config section: computation, db, email, rest, director . All have their own *_config.py
- created directory submodule and its config
- added tests for config sections
- renamed settings as application_config
- renamed computational_backend as computation
commit 4bde625
Author: Pedro Crespo <[email protected]>
Date: Fri Nov 9 20:10:34 2018 +0100
WIP
commit 5320cef
Merge: cf6c63a062f221
Author: Pedro Crespo <[email protected]>
Date: Fri Nov 9 17:17:34 2018 +0100
Merge remote-tracking branch 'upstream/master'
commit cf6c63a
Merge: 4a8c09363e662c
Author: Pedro Crespo <[email protected]>
Date: Fri Nov 9 11:09:51 2018 +0100
Merge remote-tracking branch 'upstream/master'
commit 4a8c093
Merge: 0fd29751a3ed38
Author: Pedro Crespo <[email protected]>
Date: Wed Nov 7 11:57:52 2018 +0100
Merge remote-tracking branch 'upstream/master'
commit 0fd2975
Merge: d423dcc8d7d44f
Author: Pedro Crespo <[email protected]>
Date: Mon Nov 5 10:24:49 2018 +0100
Merge remote-tracking branch 'upstream/master'
commit d423dcc
Merge: 6ca6aaddfdd594
Author: Pedro Crespo <[email protected]>
Date: Fri Nov 2 14:06:23 2018 +0100
Merge remote-tracking branch 'upstream/master'
commit 6ca6aad
Merge: e733846cae4fb1
Author: Pedro Crespo <[email protected]>
Date: Wed Oct 31 14:33:37 2018 +0100
Merge remote-tracking branch 'upstream/master'
commit e733846
Merge: 9e40d3777d6ac1
Author: Pedro Crespo <[email protected]>
Date: Wed Oct 31 13:36:25 2018 +0100
Merge branch 'master' of github.com:pcrespov/osparc-simcore
commit 9e40d37
Merge: 65f510c0b60f46
Author: Pedro Crespo <[email protected]>
Date: Tue Oct 30 18:53:50 2018 +0100
Merge remote-tracking branch 'upstream/master'
Pull
* updated storage configuration
* move the webserver-storage api to apihub
* Create bucket if not yet there
* fixes bad merge
* added director handlers
added oas specs
* linked director handlers
creating director test
* useless test
* added director client session
* added version to director schema
fixed typo
* bad merge
* removed registry_api
* removed userid from webserver api
* changed call to startDynamic stopDynamic to go through the rest API instead of websockets
* refactoring
* fixed version of path
use isfunction instead of ismethod to find handlers
* Feature/fe dsm (#15)
* Pylint
* Add reference osparc.itis stack template
* fixed call to API by explicitely using query parameters
* the server side does not like the format field...
* refatoring
* call forwarding now also forwards the query parameters
* removed logging
* added workbench json and its converted openapi counterpart
added route to start pipeline
* implementation of new route
* comment out code to fix cyclic import
* fix bad merge
* eslint
* pylint
* bad merge
* disable old start_pipeline
* bypass validation
* regenerated client sdk
* store now contains the id instead of the store name
* added async sleep when waiting for service start
fixed looking for service dependencies
* fix bad merge
* bad merge
* pass the user id to the sidecar
* fix test
* use env variable instead of hard-coded host/port
* add storage endpoint env to director so it can pass it on
add storage endpoint to sidecar so it can use it
* renamed to test_package
* mapping of routes working
* pylint
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