feat(bin): Support globs on windows and use smarter recursion

This brings logic from eslint over to documentation: instead of readdirSync, we're using the glob
module. This also, I hope, will let us support globs on Windows without changing OSX/Linux behavior.
Fixes #607

Author: tmcw

LICENSE

@@ -13,3 +13,28 @@ ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
 WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
 ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
 OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
+
+--------------------------------------------------------------------------------
+
+Contains sections of eslint
+
+ESLint
+Copyright JS Foundation and other contributors, https://js.foundation
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

docs/POLYGLOT.md

@@ -0,0 +1,39 @@
+# About documentation.js, polyglot mode, and file extensions
+
+Base assumptions:
+
+* documentation.js subsists on a combination of _source comments_ and
+  _smart inferences from source code_.
+* The default mode of documentation.js is parsing JavaScript, but it has another
+  mode, called `--polyglot` mode, that doesn't include any inference at all
+  and lets you document other kinds of source code.
+* The default settings for everything should work for most projects, but
+  this is a guide for if you have a particular setup.
+
+## File extensions
+
+Let's talk about file extensions. We have two different flags for controlling
+file extensions: `requireExtension` and `parseExtension`.
+
+* requireExtension adds additional filetypes to the node.js `require()` method.
+  By default, you can call, for instance, `require('foo')`, and the require algorithm
+  will look for `foo.js`, `foo` the module, and `foo.json`. Adding another
+  extension in requireExtension lets it look for `foo.otherextension`.
+* parseExtension adds additional filetypes to the list of filetypes documentation.js
+  thinks it can parse, and it also adds those additional filetypes to the default
+  files it looks for when you specify a directory or glob as input.
+
+## Polyglot
+
+Polyglot mode switches documentation.js from running on babylon and [babel](https://babeljs.io/)
+as a JavaScript parser, to using [get-comments](https://github.com/tunnckocore/get-comments).
+This lets it grab comments formatted in the `/** Comment */` style from source
+code that _isn't_ JavaScript, like C++ or CSS code.
+
+Since documentation.js doesn't _parse_ C++ and lots of other languages (parsing JavaScript is complicated enough!),
+it can't make any of its smart inferences about their source code: it just
+takes documentation comments and shows them as-is.
+
+You _can_ use polyglot mode to turn off inference across the board, but I don't recommend
+it. See the 'too much inference' topic in [TROUBLESHOOTING.md](TROUBLESHOOTING.md)
+for detail about that.

index.js

@@ -5,7 +5,6 @@ var fs = require('fs'),
   sort = require('./lib/sort'),
   nest = require('./lib/nest'),
   filterAccess = require('./lib/filter_access'),
-  filterJS = require('./lib/filter_js'),
   dependency = require('./lib/input/dependency'),
   shallow = require('./lib/input/shallow'),
   parseJavaScript = require('./lib/parsers/javascript'),
@@ -27,6 +26,8 @@ var fs = require('fs'),
   markdownAST = require('./lib/output/markdown_ast'),
   loadConfig = require('./lib/load_config');
 
+var parseExtensions = ['js', 'jsx', 'es5', 'es6'];
+
 /**
  * Build a pipeline of comment handlers.
  * @param {...Function|null} args - Pipeline elements. Each is a function that accepts
@@ -62,6 +63,8 @@ function expandInputs(indexes, options, callback) {
   } else {
     inputFn = dependency;
   }
+  options.parseExtensions = parseExtensions
+    .concat(options.parseExtension || []);
   inputFn(indexes, options, callback);
 }
 
@@ -214,8 +217,6 @@ function buildSync(indexes, options) {
     options.github && github,
     garbageCollect);
 
-  var jsFilterer = filterJS(options.extension, options.polyglot);
-
   return filterAccess(options.access,
     hierarchy(
       sort(
@@ -231,10 +232,6 @@ function buildSync(indexes, options) {
             indexObject = index;
           }
 
-          if (!jsFilterer(indexObject)) {
-            return [];
-          }
-
           return parseFn(indexObject, options).map(buildPipeline);
         })
         .filter(Boolean), options)));
@@ -309,7 +306,6 @@ function lint(indexes, options, callback) {
     callback(null,
       formatLint(hierarchy(
         inputs
-          .filter(filterJS(options.extension, options.polyglot))
           .reduce(function (memo, file) {
             return memo.concat(parseFn(file, options).map(lintPipeline));
           }, [])

lib/commands/shared_options.js

@@ -24,10 +24,22 @@ module.exports.sharedInputOptions = {
       'modules will be whitelisted and included in the generated documentation.',
     default: null
   },
-  'extension': {
-    describe: 'only input source files matching this extension will be parsed, ' +
-      'this option can be used multiple times.',
-    alias: 'e'
+  'requireExtension': {
+    describe: 'additional extensions to include in require() and import\'s search algorithm.' +
+      'For instance, adding .es5 would allow require("adder") to find "adder.es5"',
+    coerce: function (value) {
+      // Ensure that the value is an array
+      return [].concat(value);
+    },
+    alias: 're'
+  },
+  'parseExtension': {
+    describe: 'additional extensions to parse as source code.',
+    coerce: function (value) {
+      // Ensure that the value is an array
+      return [].concat(value);
+    },
+    alias: 'pe'
   },
   'polyglot': {
     type: 'boolean',

lib/filter_js.js

@@ -1,13 +1,12 @@
 'use strict';
 
-var mdeps = require('module-deps-sortable'),
-  fs = require('fs'),
-  path = require('path'),
-  babelify = require('babelify'),
-  filterJS = require('../filter_js'),
-  concat = require('concat-stream'),
-  moduleFilters = require('../../lib/module_filters'),
-  expandDirectories = require('./expand_directories');
+var mdeps = require('module-deps-sortable');
+var fs = require('fs');
+var path = require('path');
+var babelify = require('babelify');
+var concat = require('concat-stream');
+var moduleFilters = require('../../lib/module_filters');
+var smartGlob = require('../smart_glob.js');
 
 /**
  * Returns a readable stream of dependencies, given an array of entry
@@ -22,8 +21,6 @@ var mdeps = require('module-deps-sortable'),
  * @returns {undefined} calls callback
  */
 function dependencyStream(indexes, options, callback) {
-  var filterer = filterJS(options.extension, options.polyglot);
-
   var md = mdeps({
     /**
      * Determine whether a module should be included in documentation
@@ -33,11 +30,11 @@ function dependencyStream(indexes, options, callback) {
     filter: function (id) {
       return !!options.external || moduleFilters.internalOnly(id);
     },
-    extensions: [].concat(options.extension || [])
-      .concat(['js', 'es6', 'jsx', 'json'])
+    extensions: [].concat(options.requireExtension || [])
       .map(function (ext) {
-        return '.' + ext;
-      }),
+        return '.' + ext.replace(/^\./, '');
+      })
+      .concat(['.js', '.json', '.es6', '.jsx']),
     transform: [babelify.configure({
       sourceMap: false,
       compact: false,
@@ -55,19 +52,30 @@ function dependencyStream(indexes, options, callback) {
     })],
     postFilter: moduleFilters.externals(indexes, options)
   });
-  expandDirectories(indexes, filterer).forEach(function (index) {
+  smartGlob(indexes, options.parseExtensions).forEach(function (index) {
     md.write(path.resolve(index));
   });
   md.end();
   md.once('error', function (error) {
     return callback(error);
   });
   md.pipe(concat(function (inputs) {
-    callback(null, inputs.map(function (input) {
-      // un-transform babelify transformed source
-      input.source = fs.readFileSync(input.file, 'utf8');
-      return input;
-    }));
+    callback(null, inputs
+      .filter(function (input) {
+        // At this point, we may have allowed a JSON file to be caught by
+        // module-deps, or anything else allowed by requireExtension.
+        // otherwise module-deps would complain about
+        // it not being found. But Babel can't parse JSON, so we filter non-JavaScript
+        // files away.
+        return options.parseExtensions.indexOf(
+          path.extname(input.file).replace(/^\./, '')
+        ) > -1;
+      })
+      .map(function (input) {
+        // un-transform babelify transformed source
+        input.source = fs.readFileSync(input.file, 'utf8');
+        return input;
+      }));
   }));
 }
 

lib/input/dependency.js

@@ -1,7 +1,6 @@
 'use strict';
 
-var filterJS = require('../filter_js');
-var expandDirectories = require('./expand_directories');
+var smartGlob = require('../smart_glob.js');
 
 /**
  * A readable source for content that doesn't do dependency resolution, but
@@ -21,6 +20,16 @@ var expandDirectories = require('./expand_directories');
  * @return {undefined} calls callback
  */
 module.exports = function (indexes, options, callback) {
-  var filterer = filterJS(options.extension, options.polyglot);
-  return callback(null, expandDirectories(indexes, filterer));
+  var objects = [];
+  var strings = [];
+  indexes.forEach(function (index) {
+    if (typeof index === 'string') {
+      strings.push(index);
+    } else if (typeof index === 'object') {
+      objects.push(index);
+    } else {
+      throw new Error('Indexes should be either strings or objects');
+    }
+  });
+  return callback(null, objects.concat(smartGlob(strings, options.parseExtensions)));
 };