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lines changed Original file line number Diff line number Diff line change 41
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convert_ROI_table_to_indices ,
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)
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from fractal_tasks_core .lib_remove_FOV_overlaps import (
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- get_bbox_overlapping_pair ,
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+ get_overlapping_pairs_3D ,
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)
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from fractal_tasks_core .lib_zattrs_utils import extract_zyx_pixel_sizes
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from fractal_tasks_core .lib_zattrs_utils import rescale_datasets
@@ -379,11 +379,9 @@ def cellpose_segmentation(
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overlap_list = []
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for df in bbox_dataframe_list :
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- overlap_list .append (get_bbox_overlapping_pair (df ))
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-
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- # if len(overlap_list) > 0:
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- # raise ValueError(f"{overlap_list} "
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- # f"List of pair of bounding box overlaps")
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+ overlap_list .append (
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+ get_overlapping_pairs_3D (df , full_res_pxl_sizes_zyx )
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+ )
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# Compute and store 0-th level to disk
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da .array (fov_mask ).to_zarr (
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