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Remove zarr-errors handling from tasks #541

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tcompa opened this issue Sep 27, 2023 · 1 comment
Open

Remove zarr-errors handling from tasks #541

tcompa opened this issue Sep 27, 2023 · 1 comment

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@tcompa
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tcompa commented Sep 27, 2023

There are few places where we use try/except for zarr errors, which could be handled better (i.e. the try/except should be replaced by an if/else, with conditions based on zarr attributes).

  1. In create-omer-zarr-multiplex, when looping over wells
  2. In apply_registration_to_image, when getting the current label_list.

Note that this is not applicable (for the moment) to the ContainsArrayError errors in yokogawa-to-zarr and MIP tasks.

@tcompa
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tcompa commented Dec 12, 2023

Related: #621

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