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Consider including OMEZarrImage class in fractal-tasks-core #678

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jluethi opened this issue Apr 4, 2024 · 2 comments
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Consider including OMEZarrImage class in fractal-tasks-core #678

jluethi opened this issue Apr 4, 2024 · 2 comments

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@jluethi
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jluethi commented Apr 4, 2024

I've been experimenting with a OME-Zarr image reader class over here: https://github.com/fractal-analytics-platform/napari-ome-zarr-navigator/blob/roi_loader/src/napari_ome_zarr_navigator/ome_zarr_image.py

I've started to need some of its functionality, like easily listing available tables & filtering tables by type in the V2 refactor. Would be thinking about whether we should include a version of the OMEZarrImage in Fractal tasks core

@jluethi
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jluethi commented Apr 4, 2024

An alternative would be to rely on ez_zarr for some of that functionality, see https://github.com/fmicompbio/ez_zarr

A refactor to have an OME-Zarr image class is in progress there: fmicompbio/ez_zarr#9

@jluethi
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jluethi commented Oct 10, 2024

This will now be done by adding a dependency on ngio: https://github.com/fractal-analytics-platform/ngio

@jluethi jluethi closed this as completed Oct 10, 2024
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