Merge branch 'master' into ccr_auto_follow

* master: (64 commits)
  HLREST: add update by query API (elastic#32760)
  TEST: Increase timeout testFollowIndexAndCloseNode (elastic#33333)
  HLRC: ML Flush job (elastic#33187)
  HLRC: Adding ML Job stats (elastic#33183)
  LLREST: Drop deprecated methods (elastic#33223)
  Mute testSyncerOnClosingShard
  [DOCS] Moves machine learning APIs to docs folder (elastic#31118)
  Mute test watcher usage stats output
  [Rollup] Fix FullClusterRestart test
  Adjust soft-deletes version after backport into 6.5
  completely drop `index.shard.check_on_startup: fix` for 7.0 (elastic#33194)
  Fix AwaitsFix issue number
  Mute SmokeTestWatcherWithSecurityIT testsi
  drop `index.shard.check_on_startup: fix` (elastic#32279)
  tracked at
  [DOCS] Moves ml folder from x-pack/docs to docs (elastic#33248)
  [DOCS] Move rollup APIs to docs (elastic#31450)
  [DOCS] Rename X-Pack Commands section (elastic#33005)
  TEST: Disable soft-deletes in ParentChildTestCase
  Fixes SecurityIntegTestCase so it always adds at least one alias (elastic#33296)
  ...

Author: jasontedor

build.gradle

@@ -16,22 +16,19 @@
  * specific language governing permissions and limitations
  * under the License.
  */
+
 import com.github.jengelman.gradle.plugins.shadow.ShadowPlugin
+import org.apache.tools.ant.taskdefs.condition.Os
 import org.elasticsearch.gradle.BuildPlugin
 import org.elasticsearch.gradle.LoggedExec
 import org.elasticsearch.gradle.Version
 import org.elasticsearch.gradle.VersionCollection
 import org.elasticsearch.gradle.VersionProperties
 import org.elasticsearch.gradle.plugin.PluginBuildPlugin
 import org.gradle.plugins.ide.eclipse.model.SourceFolder
-import org.gradle.util.GradleVersion
-import org.gradle.util.DistributionLocator
-import org.apache.tools.ant.taskdefs.condition.Os
-import org.apache.tools.ant.filters.ReplaceTokens
 
 import java.nio.file.Files
 import java.nio.file.Path
-import java.security.MessageDigest
 
 plugins {
     id 'com.gradle.build-scan' version '1.13.2'
@@ -512,6 +509,16 @@ allprojects {
   tasks.cleanEclipse.dependsOn(wipeEclipseSettings)
   // otherwise the eclipse merging is *super confusing*
   tasks.eclipse.dependsOn(cleanEclipse, copyEclipseSettings)
+
+  // work arround https://github.com/gradle/gradle/issues/6582 
+  tasks.eclipseProject.mustRunAfter tasks.cleanEclipseProject
+  tasks.matching { it.name == 'eclipseClasspath' }.all {
+    it.mustRunAfter { tasks.cleanEclipseClasspath }
+  }
+  tasks.matching { it.name == 'eclipseJdt' }.all {
+    it.mustRunAfter { tasks.cleanEclipseJdt }
+  }
+  tasks.copyEclipseSettings.mustRunAfter tasks.wipeEclipseSettings
 }
 
 allprojects {

buildSrc/build.gradle

@@ -17,6 +17,7 @@
  * under the License.
  */
 import java.nio.file.Files
+import org.gradle.util.GradleVersion
 
 plugins {
   id 'java-gradle-plugin'
@@ -166,7 +167,6 @@ if (project != rootProject) {
       it.tasks.matching { it.name == 'publishNebulaPublicationToLocalTestRepository'}
     }
     exclude "**/*Tests.class"
-    include "**/*IT.class"
     testClassesDirs = sourceSets.test.output.classesDirs
     classpath = sourceSets.test.runtimeClasspath
     inputs.dir(file("src/testKit"))

buildSrc/src/main/groovy/org/elasticsearch/gradle/BuildPlugin.groovy

@@ -38,7 +38,6 @@ import org.gradle.api.artifacts.ModuleDependency
 import org.gradle.api.artifacts.ModuleVersionIdentifier
 import org.gradle.api.artifacts.ProjectDependency
 import org.gradle.api.artifacts.ResolvedArtifact
-import org.gradle.api.artifacts.SelfResolvingDependency
 import org.gradle.api.artifacts.dsl.RepositoryHandler
 import org.gradle.api.execution.TaskExecutionGraph
 import org.gradle.api.plugins.JavaPlugin
@@ -212,6 +211,7 @@ class BuildPlugin implements Plugin<Project> {
             project.rootProject.ext.minimumRuntimeVersion = minimumRuntimeVersion
             project.rootProject.ext.inFipsJvm = inFipsJvm
             project.rootProject.ext.gradleJavaVersion = JavaVersion.toVersion(gradleJavaVersion)
+            project.rootProject.ext.java9Home = "${-> findJavaHome("9")}"
         }
 
         project.targetCompatibility = project.rootProject.ext.minimumRuntimeVersion
@@ -225,6 +225,7 @@ class BuildPlugin implements Plugin<Project> {
         project.ext.javaVersions = project.rootProject.ext.javaVersions
         project.ext.inFipsJvm = project.rootProject.ext.inFipsJvm
         project.ext.gradleJavaVersion = project.rootProject.ext.gradleJavaVersion
+        project.ext.java9Home = project.rootProject.ext.java9Home
     }
 
     private static String getPaddedMajorVersion(JavaVersion compilerJavaVersionEnum) {

buildSrc/src/main/groovy/org/elasticsearch/gradle/precommit/JarHellTask.groovy

@@ -22,8 +22,8 @@ package org.elasticsearch.gradle.precommit
 import com.github.jengelman.gradle.plugins.shadow.ShadowPlugin
 import org.elasticsearch.gradle.LoggedExec
 import org.gradle.api.file.FileCollection
+import org.gradle.api.tasks.Classpath
 import org.gradle.api.tasks.OutputFile
-
 /**
  * Runs CheckJarHell on a classpath.
  */
@@ -35,9 +35,13 @@ public class JarHellTask extends LoggedExec {
      * inputs (ie the jars/class files).
      */
     @OutputFile
-    File successMarker = new File(project.buildDir, 'markers/jarHell')
+    File successMarker
+
+    @Classpath
+    FileCollection classpath
 
     public JarHellTask() {
+        successMarker = new File(project.buildDir, 'markers/jarHell-' + getName())
         project.afterEvaluate {
             FileCollection classpath = project.sourceSets.test.runtimeClasspath
             if (project.plugins.hasPlugin(ShadowPlugin)) {

buildSrc/src/main/groovy/org/elasticsearch/gradle/precommit/PrecommitTasks.groovy

@@ -31,7 +31,7 @@ class PrecommitTasks {
 
     /** Adds a precommit task, which depends on non-test verification tasks. */
     public static Task create(Project project, boolean includeDependencyLicenses) {
-        Configuration forbiddenApisConfiguration = project.configurations.create("forbiddenApisCliJar")
+        project.configurations.create("forbiddenApisCliJar")
         project.dependencies {
             forbiddenApisCliJar ('de.thetaphi:forbiddenapis:2.5')
         }
@@ -43,7 +43,7 @@ class PrecommitTasks {
             project.tasks.create('forbiddenPatterns', ForbiddenPatternsTask.class),
             project.tasks.create('licenseHeaders', LicenseHeadersTask.class),
             project.tasks.create('filepermissions', FilePermissionsTask.class),
-            project.tasks.create('jarHell', JarHellTask.class),
+            configureJarHell(project),
             configureThirdPartyAudit(project)
         ]
 
@@ -80,6 +80,12 @@ class PrecommitTasks {
         return project.tasks.create(precommitOptions)
     }
 
+    private static Task configureJarHell(Project project) {
+        Task task = project.tasks.create('jarHell', JarHellTask.class)
+        task.classpath = project.sourceSets.test.runtimeClasspath
+        return task
+    }
+
     private static Task configureThirdPartyAudit(Project project) {
         ThirdPartyAuditTask thirdPartyAuditTask = project.tasks.create('thirdPartyAudit', ThirdPartyAuditTask.class)
         ExportElasticsearchBuildResourcesTask buildResources = project.tasks.getByName('buildResources')
@@ -94,7 +100,7 @@ class PrecommitTasks {
 
     private static Task configureForbiddenApisCli(Project project) {
         Task forbiddenApisCli = project.tasks.create('forbiddenApis')
-        project.sourceSets.forEach { sourceSet ->
+        project.sourceSets.all { sourceSet ->
             forbiddenApisCli.dependsOn(
                 project.tasks.create(sourceSet.getTaskName('forbiddenApis', null), ForbiddenApisCliTask) {
                     ExportElasticsearchBuildResourcesTask buildResources = project.tasks.getByName('buildResources')

buildSrc/src/main/java/org/elasticsearch/GradleServicesAdapter.java

@@ -0,0 +1,68 @@
+/*
+ * Licensed to Elasticsearch under one or more contributor
+ * license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright
+ * ownership. Elasticsearch licenses this file to you under
+ * the Apache License, Version 2.0 (the "License"); you may
+ * not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.elasticsearch;
+
+import org.gradle.api.Action;
+import org.gradle.api.Project;
+import org.gradle.api.file.CopySpec;
+import org.gradle.api.file.FileTree;
+import org.gradle.api.tasks.WorkResult;
+import org.gradle.process.ExecResult;
+import org.gradle.process.JavaExecSpec;
+
+import java.io.File;
+
+/**
+ * Facilitate access to Gradle services without a direct dependency on Project.
+ *
+ * In a future release Gradle will offer service injection, this adapter plays that role until that time.
+ * It exposes the service methods that are part of the public API as the classes implementing them are not.
+ * Today service injection is <a href="https://github.com/gradle/gradle/issues/2363">not available</a> for
+ * extensions.
+ *
+ * Everything exposed here must be thread safe. That is the very reason why project is not passed in directly.
+ */
+public class GradleServicesAdapter {
+
+    public final Project project;
+
+    public GradleServicesAdapter(Project project) {
+        this.project = project;
+    }
+
+    public static GradleServicesAdapter getInstance(Project project) {
+        return new GradleServicesAdapter(project);
+    }
+
+    public WorkResult copy(Action<? super CopySpec> action) {
+        return project.copy(action);
+    }
+
+    public WorkResult sync(Action<? super CopySpec> action) {
+        return project.sync(action);
+    }
+
+    public ExecResult javaexec(Action<? super JavaExecSpec> action) {
+        return project.javaexec(action);
+    }
+
+    public FileTree zipTree(File zipPath) {
+        return project.zipTree(zipPath);
+    }
+}

buildSrc/src/main/java/org/elasticsearch/gradle/Distribution.java

@@ -0,0 +1,36 @@
+/*
+ * Licensed to Elasticsearch under one or more contributor
+ * license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright
+ * ownership. Elasticsearch licenses this file to you under
+ * the Apache License, Version 2.0 (the "License"); you may
+ * not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.elasticsearch.gradle;
+
+public enum Distribution {
+
+    INTEG_TEST("integ-test-zip"),
+    ZIP("zip"),
+    ZIP_OSS("zip-oss");
+
+    private final String name;
+
+    Distribution(String name) {
+        this.name = name;
+    }
+
+    public String getName() {
+        return name;
+    }
+}

buildSrc/src/main/java/org/elasticsearch/gradle/clusterformation/ClusterformationPlugin.java

@@ -0,0 +1,110 @@
+/*
+ * Licensed to Elasticsearch under one or more contributor
+ * license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright
+ * ownership. Elasticsearch licenses this file to you under
+ * the Apache License, Version 2.0 (the "License"); you may
+ * not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.elasticsearch.gradle.clusterformation;
+
+import groovy.lang.Closure;
+import org.elasticsearch.GradleServicesAdapter;
+import org.gradle.api.NamedDomainObjectContainer;
+import org.gradle.api.Plugin;
+import org.gradle.api.Project;
+import org.gradle.api.Task;
+import org.gradle.api.execution.TaskActionListener;
+import org.gradle.api.execution.TaskExecutionListener;
+import org.gradle.api.logging.Logger;
+import org.gradle.api.logging.Logging;
+import org.gradle.api.plugins.ExtraPropertiesExtension;
+import org.gradle.api.tasks.TaskState;
+
+import java.util.ArrayList;
+import java.util.Collections;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+public class ClusterformationPlugin implements Plugin<Project> {
+
+    public static final String LIST_TASK_NAME = "listElasticSearchClusters";
+    public static final String EXTENSION_NAME = "elasticSearchClusters";
+
+    private final Logger logger =  Logging.getLogger(ClusterformationPlugin.class);
+
+    @Override
+    public void apply(Project project) {
+        NamedDomainObjectContainer<? extends ElasticsearchConfiguration> container = project.container(
+            ElasticsearchNode.class,
+            (name) -> new ElasticsearchNode(name, GradleServicesAdapter.getInstance(project))
+        );
+        project.getExtensions().add(EXTENSION_NAME, container);
+
+        Task listTask = project.getTasks().create(LIST_TASK_NAME);
+        listTask.setGroup("ES cluster formation");
+        listTask.setDescription("Lists all ES clusters configured for this project");
+        listTask.doLast((Task task) ->
+            container.forEach((ElasticsearchConfiguration cluster) ->
+                logger.lifecycle("   * {}: {}", cluster.getName(), cluster.getDistribution())
+            )
+        );
+
+        Map<Task, List<ElasticsearchConfiguration>> taskToCluster = new HashMap<>();
+
+        // register an extension for all current and future tasks, so that any task can declare that it wants to use a
+        // specific cluster.
+        project.getTasks().all((Task task) ->
+            task.getExtensions().findByType(ExtraPropertiesExtension.class)
+            .set(
+                "useCluster",
+                new Closure<Void>(this, this) {
+                    public void doCall(ElasticsearchConfiguration conf) {
+                        taskToCluster.computeIfAbsent(task, k -> new ArrayList<>()).add(conf);
+                    }
+                })
+        );
+
+        project.getGradle().getTaskGraph().whenReady(taskExecutionGraph ->
+            taskExecutionGraph.getAllTasks()
+                .forEach(task ->
+                    taskToCluster.getOrDefault(task, Collections.emptyList()).forEach(ElasticsearchConfiguration::claim)
+                )
+        );
+        project.getGradle().addListener(
+            new TaskActionListener() {
+                @Override
+                public void beforeActions(Task task) {
+                    // we only start the cluster before the actions, so we'll not start it if the task is up-to-date
+                    taskToCluster.getOrDefault(task, new ArrayList<>()).forEach(ElasticsearchConfiguration::start);
+                }
+                @Override
+                public void afterActions(Task task) {}
+            }
+        );
+        project.getGradle().addListener(
+            new TaskExecutionListener() {
+                @Override
+                public void afterExecute(Task task, TaskState state) {
+                    // always un-claim the cluster, even if _this_ task is up-to-date, as others might not have been and caused the
+                    // cluster to start.
+                    taskToCluster.getOrDefault(task, new ArrayList<>()).forEach(ElasticsearchConfiguration::unClaimAndStop);
+                }
+                @Override
+                public void beforeExecute(Task task) {}
+            }
+        );
+    }
+
+}