Merge remote-tracking branch 'es/ccr' into ccr_security

* es/ccr: (78 commits)
  Upgrade to Lucene-7.4-snapshot-6705632810 (elastic#30519)
  add version compatibility from 6.4.0 after backport, see elastic#30319 (elastic#30390)
  Security: Simplify security index listeners (elastic#30466)
  Add proper longitude validation in geo_polygon_query (elastic#30497)
  Remove Discovery.AckListener.onTimeout() (elastic#30514)
  Build: move generated-resources to build (elastic#30366)
  Reindex: Fold "with all deps" project into reindex (elastic#30154)
  Isolate REST client single host tests (elastic#30504)
  Solve Gradle deprecation warnings around shadowJar (elastic#30483)
  SAML: Process only signed data (elastic#30420)
  Remove BWC repository test (elastic#30500)
  Build: Remove xpack specific run task (elastic#30487)
  AwaitsFix IntegTestZipClientYamlTestSuiteIT#indices.split tests
  Enable soft-deletes in v6.4
  LLClient: Add setJsonEntity (elastic#30447)
  [CCR] Read changes from Lucene instead of translog (elastic#30120)
  Expose CommonStatsFlags directly in IndicesStatsRequest. (elastic#30163)
  Silence IndexUpgradeIT test failures. (elastic#30430)
  Bump Gradle heap to 1792m (elastic#30484)
  [docs] add warning for read-write indices in force merge documentation (elastic#28869)
  ...

Author: martijnvg

CONTRIBUTING.md

@@ -41,7 +41,7 @@ We enjoy working with contributors to get their code accepted. There are many ap
 Note that it is unlikely the project will merge refactors for the sake of refactoring. These
 types of pull requests have a high cost to maintainers in reviewing and testing with little
 to no tangible benefit. This especially includes changes generated by tools. For example,
-converting all generic interface instances to use the diamond operator. 
+converting all generic interface instances to use the diamond operator.
 
 The process for contributing to any of the [Elastic repositories](https://github.com/elastic/) is similar. Details for individual projects can be found below.
 
@@ -209,6 +209,95 @@ Before submitting your changes, run the test suite to make sure that nothing is
 ./gradlew check
 ```
 
+### Project layout
+
+This repository is split into many top level directories. The most important
+ones are:
+
+#### `docs`
+Documentation for the project.
+
+#### `distribution`
+Builds our tar and zip archives and our rpm and deb packages.
+
+#### `libs`
+Libraries used to build other parts of the project. These are meant to be
+internal rather than general purpose. We have no plans to
+[semver](https://semver.org/) their APIs or accept feature requests for them.
+We publish them to maven central because they are dependencies of our plugin
+test framework, high level rest client, and jdbc driver but they really aren't
+general purpose enough to *belong* in maven central. We're still working out
+what to do here.
+
+#### `modules`
+Features that are shipped with Elasticsearch by default but are not built in to
+the server. We typically separate features from the server because they require
+permissions that we don't believe *all* of Elasticsearch should have or because
+they depend on libraries that we don't believe *all* of Elasticsearch should
+depend on.
+
+For example, reindex requires the `connect` permission so it can perform
+reindex-from-remote but we don't believe that the *all* of Elasticsearch should
+have the "connect". For another example, Painless is implemented using antlr4
+and asm and we don't believe that *all* of Elasticsearch should have access to
+them.
+
+#### `plugins`
+Officially supported plugins to Elasticsearch. We decide that a feature should
+be a plugin rather than shipped as a module because we feel that it is only
+important to a subset of users, especially if it requires extra dependencies.
+
+The canonical example of this is the ICU analysis plugin. It is important for
+folks who want the fairly language neutral ICU analyzer but the library to
+implement the analyzer is 11MB so we don't ship it with Elasticsearch by
+default.
+
+Another example is the `discovery-gce` plugin. It is *vital* to folks running
+in [GCP](https://cloud.google.com/) but useless otherwise and it depends on a
+dozen extra jars.
+
+#### `qa`
+Honestly this is kind of in flux and we're not 100% sure where we'll end up.
+Right now the directory contains
+* Tests that require multiple modules or plugins to work
+* Tests that form a cluster made up of multiple versions of Elasticsearch like
+full cluster restart, rolling restarts, and mixed version tests
+* Tests that test the Elasticsearch clients in "interesting" places like the
+`wildfly` project.
+* Tests that test Elasticsearch in funny configurations like with ingest
+disabled
+* Tests that need to do strange things like install plugins that thrown
+uncaught `Throwable`s or add a shutdown hook
+But we're not convinced that all of these things *belong* in the qa directory.
+We're fairly sure that tests that require multiple modules or plugins to work
+should just pick a "home" plugin. We're fairly sure that the multi-version
+tests *do* belong in qa. Beyond that, we're not sure. If you want to add a new
+qa project, open a PR and be ready to discuss options.
+
+#### `server`
+The server component of Elasticsearch that contains all of the modules and
+plugins. Right now things like the high level rest client depend on the server
+but we'd like to fix that in the future.
+
+#### `test`
+Our test framework and test fixtures. We use the test framework for testing the
+server, the plugins, and modules, and pretty much everything else. We publish
+the test framework so folks who develop Elasticsearch plugins can use it to
+test the plugins. The test fixtures are external processes that we start before
+running specific tests that rely on them.
+
+For example, we have an hdfs test that uses mini-hdfs to test our
+repository-hdfs plugin.
+
+#### `x-pack`
+Commercially licensed code that integrates with the rest of Elasticsearch. The
+`docs` subdirectory functions just like the top level `docs` subdirectory and
+the `qa` subdirectory functions just like the top level `qa` subdirectory. The
+`plugin` subdirectory contains the x-pack module which runs inside the
+Elasticsearch process. The `transport-client` subdirectory contains extensions
+to Elasticsearch's standard transport client to work properly with x-pack.
+
+
 Contributing as part of a class
 -------------------------------
 In general Elasticsearch is happy to accept contributions that were created as

benchmarks/build.gradle

@@ -24,22 +24,22 @@ buildscript {
         }
     }
     dependencies {
-        classpath 'com.github.jengelman.gradle.plugins:shadow:2.0.2'
+        classpath 'com.github.jengelman.gradle.plugins:shadow:2.0.4'
     }
 }
 
 apply plugin: 'elasticsearch.build'
-// build an uberjar with all benchmarks
-apply plugin: 'com.github.johnrengelman.shadow'
-// have the shadow plugin provide the runShadow task
-apply plugin: 'application'
+
+// order of this seciont matters, see: https://github.com/johnrengelman/shadow/issues/336
+apply plugin: 'application' // have the shadow plugin provide the runShadow task
+mainClassName = 'org.openjdk.jmh.Main'
+apply plugin: 'com.github.johnrengelman.shadow' // build an uberjar with all benchmarks
 
 // Not published so no need to assemble
 tasks.remove(assemble)
 build.dependsOn.remove('assemble')
 
 archivesBaseName = 'elasticsearch-benchmarks'
-mainClassName = 'org.openjdk.jmh.Main'
 
 test.enabled = false
 

buildSrc/src/main/groovy/org/elasticsearch/gradle/BuildPlugin.groovy

@@ -497,10 +497,15 @@ class BuildPlugin implements Plugin<Project> {
         project.afterEvaluate {
             project.tasks.withType(JavaCompile) {
                 final JavaVersion targetCompatibilityVersion = JavaVersion.toVersion(it.targetCompatibility)
-                // we fork because compiling lots of different classes in a shared jvm can eventually trigger GC overhead limitations
-                options.fork = true
-                options.forkOptions.javaHome = new File(project.compilerJavaHome)
-                options.forkOptions.memoryMaximumSize = "512m"
+                final compilerJavaHomeFile = new File(project.compilerJavaHome)
+                // we only fork if the Gradle JDK is not the same as the compiler JDK
+                if (compilerJavaHomeFile.canonicalPath == Jvm.current().javaHome.canonicalPath) {
+                    options.fork = false
+                } else {
+                    options.fork = true
+                    options.forkOptions.javaHome = compilerJavaHomeFile
+                    options.forkOptions.memoryMaximumSize = "512m"
+                }
                 if (targetCompatibilityVersion == JavaVersion.VERSION_1_8) {
                     // compile with compact 3 profile by default
                     // NOTE: this is just a compile time check: does not replace testing with a compact3 JRE
@@ -530,10 +535,15 @@ class BuildPlugin implements Plugin<Project> {
             }
             // also apply release flag to groovy, which is used in build-tools
             project.tasks.withType(GroovyCompile) {
-                final JavaVersion targetCompatibilityVersion = JavaVersion.toVersion(it.targetCompatibility)
-                options.fork = true
-                options.forkOptions.javaHome = new File(project.compilerJavaHome)
-                options.compilerArgs << '--release' << targetCompatibilityVersion.majorVersion
+                final compilerJavaHomeFile = new File(project.compilerJavaHome)
+                // we only fork if the Gradle JDK is not the same as the compiler JDK
+                if (compilerJavaHomeFile.canonicalPath == Jvm.current().javaHome.canonicalPath) {
+                    options.fork = false
+                } else {
+                    options.fork = true
+                    options.forkOptions.javaHome = compilerJavaHomeFile
+                    options.compilerArgs << '--release' << JavaVersion.toVersion(it.targetCompatibility).majorVersion
+                }
             }
         }
     }
@@ -549,6 +559,11 @@ class BuildPlugin implements Plugin<Project> {
             javadoc.classpath = javadoc.getClasspath().filter { f ->
                 return classes.contains(f) == false
             }
+            /*
+             * Generate docs using html5 to suppress a warning from `javadoc`
+             * that the default will change to html5 in the future.
+             */
+            javadoc.options.addBooleanOption('html5', true)
         }
         configureJavadocJar(project)
     }

buildSrc/src/main/groovy/org/elasticsearch/gradle/doc/RestTestsFromSnippetsTask.groovy

@@ -141,9 +141,11 @@ public class RestTestsFromSnippetsTask extends SnippetsTask {
         private static final String SYNTAX = {
             String method = /(?<method>GET|PUT|POST|HEAD|OPTIONS|DELETE)/
             String pathAndQuery = /(?<pathAndQuery>[^\n]+)/
-            String badBody = /GET|PUT|POST|HEAD|OPTIONS|DELETE|#/
+            String badBody = /GET|PUT|POST|HEAD|OPTIONS|DELETE|startyaml|#/
             String body = /(?<body>(?:\n(?!$badBody)[^\n]+)+)/
-            String nonComment = /$method\s+$pathAndQuery$body?/
+            String rawRequest = /(?:$method\s+$pathAndQuery$body?)/
+            String yamlRequest = /(?:startyaml(?s)(?<yaml>.+?)(?-s)endyaml)/
+            String nonComment = /(?:$rawRequest|$yamlRequest)/
             String comment = /(?<comment>#.+)/
             /(?:$comment|$nonComment)\n+/
         }()
@@ -333,6 +335,11 @@ public class RestTestsFromSnippetsTask extends SnippetsTask {
                     // Comment
                     return
                 }
+                String yamlRequest = matcher.group("yaml");
+                if (yamlRequest != null) {
+                    current.println(yamlRequest)
+                    return
+                }
                 String method = matcher.group("method")
                 String pathAndQuery = matcher.group("pathAndQuery")
                 String body = matcher.group("body")

buildSrc/version.properties

@@ -1,5 +1,5 @@
 elasticsearch     = 7.0.0-alpha1
-lucene            = 7.4.0-snapshot-1ed95c097b
+lucene            = 7.4.0-snapshot-6705632810
 
 # optional dependencies
 spatial4j         = 0.7

client/rest-high-level/src/main/java/org/elasticsearch/client/IndicesClient.java

@@ -43,12 +43,16 @@
 import org.elasticsearch.action.admin.indices.open.OpenIndexResponse;
 import org.elasticsearch.action.admin.indices.refresh.RefreshRequest;
 import org.elasticsearch.action.admin.indices.refresh.RefreshResponse;
+import org.elasticsearch.action.admin.indices.settings.get.GetSettingsRequest;
+import org.elasticsearch.action.admin.indices.settings.get.GetSettingsResponse;
 import org.elasticsearch.action.admin.indices.rollover.RolloverRequest;
 import org.elasticsearch.action.admin.indices.rollover.RolloverResponse;
 import org.elasticsearch.action.admin.indices.settings.put.UpdateSettingsRequest;
 import org.elasticsearch.action.admin.indices.settings.put.UpdateSettingsResponse;
 import org.elasticsearch.action.admin.indices.shrink.ResizeRequest;
 import org.elasticsearch.action.admin.indices.shrink.ResizeResponse;
+import org.elasticsearch.action.admin.indices.template.put.PutIndexTemplateRequest;
+import org.elasticsearch.action.admin.indices.template.put.PutIndexTemplateResponse;
 
 import java.io.IOException;
 import java.util.Collections;
@@ -265,6 +269,28 @@ public void flushAsync(FlushRequest flushRequest, ActionListener<FlushResponse>
                 listener, emptySet(), headers);
     }
 
+    /**
+     * Retrieve the settings of one or more indices
+     * <p>
+     * See <a href="https://www.elastic.co/guide/en/elasticsearch/reference/current/indices-get-settings.html">
+     * Indices Get Settings API on elastic.co</a>
+     */
+    public GetSettingsResponse getSettings(GetSettingsRequest getSettingsRequest, Header... headers) throws IOException {
+        return restHighLevelClient.performRequestAndParseEntity(getSettingsRequest, RequestConverters::getSettings,
+            GetSettingsResponse::fromXContent, emptySet(), headers);
+    }
+
+    /**
+     * Asynchronously retrieve the settings of one or more indices
+     * <p>
+     * See <a href="https://www.elastic.co/guide/en/elasticsearch/reference/current/indices-get-settings.html">
+     * Indices Get Settings API on elastic.co</a>
+     */
+    public void getSettingsAsync(GetSettingsRequest getSettingsRequest, ActionListener<GetSettingsResponse> listener, Header... headers) {
+        restHighLevelClient.performRequestAsyncAndParseEntity(getSettingsRequest, RequestConverters::getSettings,
+            GetSettingsResponse::fromXContent, listener, emptySet(), headers);
+    }
+
     /**
      * Force merge one or more indices using the Force Merge API
      * <p>
@@ -432,4 +458,26 @@ public void putSettingsAsync(UpdateSettingsRequest updateSettingsRequest, Action
                 UpdateSettingsResponse::fromXContent, listener, emptySet(), headers);
     }
 
+    /**
+     * Puts an index template using the Index Templates API
+     * <p>
+     * See <a href="https://www.elastic.co/guide/en/elasticsearch/reference/current/indices-templates.html"> Index Templates API
+     * on elastic.co</a>
+     */
+    public PutIndexTemplateResponse putTemplate(PutIndexTemplateRequest putIndexTemplateRequest, Header... headers) throws IOException {
+        return restHighLevelClient.performRequestAndParseEntity(putIndexTemplateRequest, RequestConverters::putTemplate,
+            PutIndexTemplateResponse::fromXContent, emptySet(), headers);
+    }
+
+    /**
+     * Asynchronously puts an index template using the Index Templates API
+     * <p>
+     * See <a href="https://www.elastic.co/guide/en/elasticsearch/reference/current/indices-templates.html"> Index Templates API
+     * on elastic.co</a>
+     */
+    public void putTemplateAsync(PutIndexTemplateRequest putIndexTemplateRequest,
+                                 ActionListener<PutIndexTemplateResponse> listener, Header... headers) {
+        restHighLevelClient.performRequestAsyncAndParseEntity(putIndexTemplateRequest, RequestConverters::putTemplate,
+            PutIndexTemplateResponse::fromXContent, listener, emptySet(), headers);
+    }
 }

client/rest-high-level/src/main/java/org/elasticsearch/client/RequestConverters.java

@@ -29,6 +29,7 @@
 import org.apache.http.entity.ContentType;
 import org.apache.lucene.util.BytesRef;
 import org.elasticsearch.action.DocWriteRequest;
+import org.elasticsearch.action.admin.cluster.repositories.get.GetRepositoriesRequest;
 import org.elasticsearch.action.admin.cluster.settings.ClusterUpdateSettingsRequest;
 import org.elasticsearch.action.admin.indices.alias.IndicesAliasesRequest;
 import org.elasticsearch.action.admin.indices.alias.get.GetAliasesRequest;
@@ -44,8 +45,10 @@
 import org.elasticsearch.action.admin.indices.refresh.RefreshRequest;
 import org.elasticsearch.action.admin.indices.rollover.RolloverRequest;
 import org.elasticsearch.action.admin.indices.settings.put.UpdateSettingsRequest;
+import org.elasticsearch.action.admin.indices.settings.get.GetSettingsRequest;
 import org.elasticsearch.action.admin.indices.shrink.ResizeRequest;
 import org.elasticsearch.action.admin.indices.shrink.ResizeType;
+import org.elasticsearch.action.admin.indices.template.put.PutIndexTemplateRequest;
 import org.elasticsearch.action.bulk.BulkRequest;
 import org.elasticsearch.action.delete.DeleteRequest;
 import org.elasticsearch.action.fieldcaps.FieldCapabilitiesRequest;
@@ -76,7 +79,6 @@
 import org.elasticsearch.common.xcontent.XContentType;
 import org.elasticsearch.index.VersionType;
 import org.elasticsearch.index.rankeval.RankEvalRequest;
-import org.elasticsearch.rest.action.RestFieldCapabilitiesAction;
 import org.elasticsearch.rest.action.search.RestSearchAction;
 import org.elasticsearch.search.fetch.subphase.FetchSourceContext;
 
@@ -85,10 +87,7 @@
 import java.net.URI;
 import java.net.URISyntaxException;
 import java.nio.charset.Charset;
-import java.util.Collections;
-import java.util.HashMap;
 import java.util.Locale;
-import java.util.Map;
 import java.util.StringJoiner;
 
 final class RequestConverters {
@@ -600,6 +599,22 @@ static Request rollover(RolloverRequest rolloverRequest) throws IOException {
         return request;
     }
 
+    static Request getSettings(GetSettingsRequest getSettingsRequest) throws IOException {
+        String[] indices = getSettingsRequest.indices() == null ? Strings.EMPTY_ARRAY : getSettingsRequest.indices();
+        String[] names = getSettingsRequest.names() == null ? Strings.EMPTY_ARRAY : getSettingsRequest.names();
+
+        String endpoint = endpoint(indices, "_settings", names);
+        Request request = new Request(HttpGet.METHOD_NAME, endpoint);
+
+        Params params = new Params(request);
+        params.withIndicesOptions(getSettingsRequest.indicesOptions());
+        params.withLocal(getSettingsRequest.local());
+        params.withIncludeDefaults(getSettingsRequest.includeDefaults());
+        params.withMasterTimeout(getSettingsRequest.masterNodeTimeout());
+
+        return request;
+    }
+
     static Request indicesExist(GetIndexRequest getIndexRequest) {
         // this can be called with no indices as argument by transport client, not via REST though
         if (getIndexRequest.indices() == null || getIndexRequest.indices().length == 0) {
@@ -630,6 +645,32 @@ static Request indexPutSettings(UpdateSettingsRequest updateSettingsRequest) thr
         return request;
     }
 
+    static Request getRepositories(GetRepositoriesRequest getRepositoriesRequest) {
+        String[] repositories = getRepositoriesRequest.repositories() == null ? Strings.EMPTY_ARRAY : getRepositoriesRequest.repositories();
+        String endpoint = new EndpointBuilder().addPathPartAsIs("_snapshot").addCommaSeparatedPathParts(repositories).build();
+        Request request = new Request(HttpGet.METHOD_NAME, endpoint);
+
+        Params parameters = new Params(request);
+        parameters.withMasterTimeout(getRepositoriesRequest.masterNodeTimeout());
+        parameters.withLocal(getRepositoriesRequest.local());
+        return request;
+    }
+
+    static Request putTemplate(PutIndexTemplateRequest putIndexTemplateRequest) throws IOException {
+        String endpoint = new EndpointBuilder().addPathPartAsIs("_template").addPathPart(putIndexTemplateRequest.name()).build();
+        Request request = new Request(HttpPut.METHOD_NAME, endpoint);
+        Params params = new Params(request);
+        params.withMasterTimeout(putIndexTemplateRequest.masterNodeTimeout());
+        if (putIndexTemplateRequest.create()) {
+            params.putParam("create", Boolean.TRUE.toString());
+        }
+        if (Strings.hasText(putIndexTemplateRequest.cause())) {
+            params.putParam("cause", putIndexTemplateRequest.cause());
+        }
+        request.setEntity(createEntity(putIndexTemplateRequest, REQUEST_BODY_CONTENT_TYPE));
+        return request;
+    }
+
     private static HttpEntity createEntity(ToXContent toXContent, XContentType xContentType) throws IOException {
         BytesRef source = XContentHelper.toXContent(toXContent, xContentType, false).toBytesRef();
         return new ByteArrayEntity(source.bytes, source.offset, source.length, createContentType(xContentType));