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Merge pull request #3446 from nipy/rel/1.7.1
REL: 1.7.1
2 parents 4ac2189 + b7c3df0 commit f8f7fb5

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‎.circleci/config.yml

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@@ -213,9 +213,9 @@ jobs:
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- run:
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name: Install hub
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command: |
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curl -sSL https://github.com/github/hub/releases/download/v2.2.9/hub-linux-amd64-2.2.9.tgz | \
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curl -sSL https://github.com/github/hub/releases/download/v2.14.2/hub-linux-amd64-2.14.2.tgz | \
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tar zxv -C /tmp
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sudo /tmp/hub-linux-amd64-2.2.9/install
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sudo /tmp/hub-linux-amd64-2.14.2/install
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- run:
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name: Expand SSH Key
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command: |
@@ -225,10 +225,11 @@ jobs:
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chmod go-rwx ~/.ssh/id_ed25519
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ssh-keygen -y -f ~/.ssh/id_ed25519 > ~/.ssh/id_ed25519.pub
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- run:
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name: Set git identity
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name: Set git/hub configuration
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command: |
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git config --global user.name "nipybot"
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git config --global user.email "[email protected]"
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git config --global hub.protocol ssh
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- run:
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name: Update feedstock
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command: |

‎.mailmap

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@@ -11,6 +11,7 @@ Alexander Schaefer <[email protected]> <aschaefer@aschaefer-U36SD.(none)>
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Alexandre M. Savio <[email protected]>
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Alexandre M. Savio <[email protected]> <[email protected]>
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Andrea Dell'Orco <[email protected]>
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Andrea Dell'Orco <[email protected]> <[email protected]>
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Andrew Floren <[email protected]>
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Andrey Chetverikov <[email protected]>
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Andrey Chetverikov <[email protected]> <[email protected]>
@@ -64,6 +65,8 @@ Elizabeth DuPre <[email protected]>
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Erik Ziegler <[email protected]>
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Erik Ziegler <[email protected]> <[email protected]>
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Erik Ziegler <[email protected]> <erik@erik-ubuntu.(none)>
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Fabio Bernardoni <[email protected]>
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Fabio Bernardoni <[email protected]> <[email protected]>
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Feilong Ma <[email protected]>
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Fernando Pérez-García <[email protected]>
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Franz Liem <[email protected]>
@@ -109,6 +112,7 @@ Kevin Sitek <[email protected]>
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Kevin Sitek <[email protected]> <[email protected]>
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Sin Kim <[email protected]>
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Sin Kim <[email protected]> <[email protected]>
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Koen Helwegen <[email protected]>
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Kornelius Podranski <[email protected]>
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Krzysztof J. Gorgolewski <[email protected]>
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Krzysztof J. Gorgolewski <[email protected]> <[email protected]>
@@ -121,6 +125,7 @@ Kshitij Chawla <[email protected]>
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Leonie Lampe <[email protected]>
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Lukas Snoek <[email protected]>
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Marcel Falkiewicz <[email protected]> <[email protected]>
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Maria de Fatima Dias <[email protected]>
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Maria de Fatima Dias <[email protected]> <[email protected]>
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Martin Perez-Guevara <[email protected]>
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Mathias Goncalves <[email protected]> <[email protected]>
@@ -153,6 +158,8 @@ Oscar Esteban <[email protected]>
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Oscar Esteban <[email protected]> <code@oscaresteban>
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Pablo Polosecki <[email protected]> <[email protected]>
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Pablo Polosecki <[email protected]> <[email protected]>
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Paul Kuntke <[email protected]>
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Paul Kuntke <[email protected]> <[email protected]>
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Paul Sharp <[email protected]>
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Ranjit Khanuja <[email protected]>
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Rastko Ćirić <[email protected]>

‎.zenodo.json

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{
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"name": "Erickson, Drew"
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},
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{
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"affiliation": "CIBIT, UC",
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"name": "Dias, Maria de Fatima",
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"orcid": "0000-0001-8878-1750"
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},
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{
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"affiliation": "Neuroscience Program, University of Iowa",
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"name": "Kent, James D.",
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{
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"name": "Tungaraza, Rosalia"
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},
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{
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"affiliation": "Charit\u00e8 Universit\u00e4tsmedizin Berlin, Germany",
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"name": "Dell'Orco, Andrea",
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"orcid": "0000-0002-3964-8360"
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},
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{
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"affiliation": "Child Mind Institute",
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"name": "Frohlich, Caroline"
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"orcid": "0000-0003-1988-5091"
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},
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{
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"affiliation": "Charit\u00e8 Universit\u00e4tsmedizin Berlin, Germany",
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"name": "Dell'Orco, Andrea",
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"orcid": "0000-0002-3964-8360"
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"affiliation": "Indiana University, IN, USA",
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"name": "Koudoro, Serge"
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},
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{
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"affiliation": "University College London",
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"name": "Varoquaux, Gael",
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"orcid": "0000-0003-1076-5122"
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},
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{
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"name": "Watanabe, Aimi"
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},
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{
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"name": "Mordom, David"
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},
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{
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"affiliation": "Charite Universitatsmedizin Berlin, Germany",
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"name": "Waller, Lea",
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"orcid": "0000-0002-3239-6957"
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},
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{
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"affiliation": "CIBIT, UC",
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"name": "Dias, Maria de Fatima",
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"orcid": "0000-0001-8878-1750"
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"name": "Watanabe, Aimi"
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},
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{
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"name": "Mordom, David"
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},
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{
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"affiliation": "ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France.",
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"name": "Guillon, Je\u0301re\u0301my",
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"orcid": "0000-0002-2672-7510"
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},
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{
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"affiliation": "Indiana University, IN, USA",
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"name": "Koudoro, Serge"
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},
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{
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"affiliation": "Penn Statistics in Imaging and Visualization Endeavor, University of Pennsylvania",
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"name": "Robert-Fitzgerald, Timothy",
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"name": "Gillman, Ashley",
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"orcid": "0000-0001-9130-1092"
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},
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{
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"affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universit\u00e4t Dresden, Dresden, Germany",
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"name": "Bernardoni, Fabio",
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"orcid": "0000-0002-5112-405X"
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},
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{
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"affiliation": "State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands",
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"name": "Kong, Xiang-Zhen",
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"name": "Geisler, Daniel",
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"orcid": "0000-0003-2076-5329"
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},
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{
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"affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universit\u00e4t Dresden, Dresden, Germany",
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"name": "Bernardoni, Fabio",
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"orcid": "0000-0002-5112-405X"
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},
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{
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"name": "Salvatore, John"
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},
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"name": "Glatard, Tristan",
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"orcid": "0000-0003-2620-5883"
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},
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{
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"affiliation": "Sagol School of Neuroscience, Tel Aviv University",
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"name": "Baratz, Zvi",
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"orcid": "0000-0001-7159-1387"
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},
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{
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"affiliation": "Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.",
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"name": "Tabas, Alejandro",
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"name": "Iqbal, Shariq",
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"orcid": "0000-0003-2766-8425"
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},
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{
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"affiliation": "Sagol School of Neuroscience, Tel Aviv University",
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"name": "Baratz, Zvi",
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"orcid": "0000-0001-7159-1387"
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},
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{
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"affiliation": "University of Iowa",
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"name": "Welch, David"
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"name": "Stojic, Hrvoje",
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"orcid": "0000-0002-9699-9052"
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},
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{
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"name": "Hui Qian, Tan"
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},
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{
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"affiliation": "German Institute for International Educational Research",
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"name": "Linkersd\u00f6rfer, Janosch",
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"name": "Pauli, Wolfgang M.",
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"orcid": "0000-0002-0966-0254"
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},
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{
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"affiliation": "Weill Cornell Medicine",
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"name": "Xie, Xihe",
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"orcid": "0000-0001-6595-2473"
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},
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{
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"affiliation": "NIMH, Scientific and Statistical Computing Core",
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"name": "Glen, Daniel",
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"name": "Lee, Nat",
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"orcid": "0000-0001-9308-9988"
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},
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{
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"affiliation": "Insitiute and Polyclinc for Diagnostic and Interventional Neuroradiology, University Hospital Carl Gustav Carus, Dresden, Germany",
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"name": "Kuntke, Paul",
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"orcid": "0000-0003-1838-2230"
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},
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{
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"name": "Jalan, Raunak"
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},
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{
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"name": "Modat, Marc"
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},
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{
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"affiliation": "University of Waterloo",
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"name": "Mukhometzianov, Rinat",
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"orcid": "0000-0003-1274-4827"
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},
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{
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"name": "Harms, Robbert"
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},
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{
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"name": "Khanuja, Ranjeet"
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},
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{
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"affiliation": "University of Waterloo",
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"name": "Mukhometzianov, Rinat",
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"orcid": "0000-0003-1274-4827"
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},
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{
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"name": "Urchs, Sebastian"
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},
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"name": "Broderick, William",
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"orcid": "0000-0002-8999-9003"
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},
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{
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"affiliation": "Weill Cornell Medicine",
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"name": "Xie, Xihe",
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"orcid": "0000-0001-6595-2473"
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},
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{
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"name": "Tambini, Arielle"
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},
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"affiliation": "MIT, HMS",
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"name": "Ghosh, Satrajit",
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"orcid": "0000-0002-5312-6729"
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},
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{
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"name": "Hui Qian, Tan"
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},
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{
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"affiliation": "Insitiute and Polyclinc for Diagnostic and Interventional Neuroradiology, University Hospital Carl Gustav Carus, Dresden, Germany",
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"name": "Kuntke, Paul",
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"orcid": "0000-0003-1838-2230"
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}
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}
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],
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"keywords": [
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"neuroimaging",

‎doc/changelog/1.X.X-changelog.rst

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1.7.1 (April 05, 2022)
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======================
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(`Full changelog <https://github.com/nipy/nipype/milestone/1.7.1?closed=1>`__)
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* FIX: Allow ``ConvertScalarImageToRGBInputSpec.mask_file`` to be ``"none"`` (https://github.com/nipy/nipype/pull/3364)
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* FIX: Use a more robust strategy for detecting ANTs version (https://github.com/nipy/nipype/pull/3444)
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* FIX: Retry renaming pkl(z) files on failure (https://github.com/nipy/nipype/pull/3404)
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* FIX: Escape metacharacters when parsing dcm2niix outputs (https://github.com/nipy/nipype/pull/3417)
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* FIX: Import error for nipype.interfaces.dipy.base (https://github.com/nipy/nipype/pull/3414)
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* FIX: ``ValueError`` when using ``ResourceMonitor`` (https://github.com/nipy/nipype/pull/3419)
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* FIX: Improve error handling of ``CommandLine`` interfaces (https://github.com/nipy/nipype/pull/3395)
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* FIX: Bugs in ApplyVDM interface (https://github.com/nipy/nipype/pull/3396)
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* ENH: Add MRTrix3 interfaces (pared-down gh-3426) (https://github.com/nipy/nipype/pull/3445)
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* ENH: Enable BidsDataGrabber to load saved layouts (https://github.com/nipy/nipype/pull/3421)
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* ENH: ROBEX interface (https://github.com/nipy/nipype/pull/3443)
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* ENH: Include several operations to ANTs's ImageMath interface, including ReplicateImage and ReplicateDisplacement (https://github.com/nipy/nipype/pull/3435)
18+
* ENH: Add "GenericLabel" to antsRegistration interpolation option. (https://github.com/nipy/nipype/pull/3424)
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* ENH: added Apply VDM functionality to FieldMap SPM interface (https://github.com/nipy/nipype/pull/3394)
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* DOC: Side bar and main page fixes (https://github.com/nipy/nipype/pull/3397)
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* TEST: Allow SVD columns to flip sign (https://github.com/nipy/nipype/pull/3405)
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* MNT: rename dipy ``move_streamlines`` to ``transform_tracking_output`` (https://github.com/nipy/nipype/pull/3412)
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* MNT: Test on Python 3.10 (https://github.com/nipy/nipype/pull/3438)
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* MNT: Added ORCID iD (https://github.com/nipy/nipype/pull/3436)
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1.7.0 (October 20, 2021)
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========================
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‎doc/users/install.rst

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While `all` installs everything, one can also install select components as
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listed below::
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'doc': ['Sphinx>=1.4', 'matplotlib', 'pydotplus', 'pydot>=1.2.3'],
54-
'tests': ['pytest-cov', 'codecov'],
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'nipy': ['nitime', 'nilearn', 'dipy', 'nipy', 'matplotlib'],
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'profiler': ['psutil'],
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'data': ['datalad'],
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'doc': ['dipy', 'ipython', 'matplotlib', 'nbsphinx', 'sphinx-argparse',
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'sphinx>=2.1.2', 'sphinxcontrib-apidoc'],
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'duecredit': ['duecredit'],
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'nipy': ['nitime', 'nilearn', 'dipy', 'nipy', 'matplotlib'],
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'profiler': ['psutil>=5.0'],
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'pybids': ['pybids>=0.7.0'],
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'specs': ['black'],
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'ssh': ['paramiko'],
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'tests': ['codecov', 'coverage<5', 'pytest', 'pytest-cov', 'pytest-env',
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'pytest-timeout'],
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'xvfbwrapper': ['xvfbwrapper'],
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‎nipype/info.py

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# nipype version information
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# Remove -dev for release
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__version__ = "1.7.1-dev"
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__version__ = "1.7.1"
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def get_nipype_gitversion():

‎tools/feedstock.sh

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#
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# 2018 Chris Markiewicz
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set -x
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set -ex
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REPO=${1:-$CIRCLE_PROJECT_REPONAME}
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FEEDSTOCK=${2:-$REPO-feedstock}
@@ -62,7 +62,7 @@ if git checkout -t $GITHUB_USER/$BRANCH; then
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NEW_PR=false
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git checkout -b $BRANCH origin/main
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fi
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# Calculate hash
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# Set version, hash, and reset build number
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# Use ~ for separator in URL, to avoid slash issues
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sed -i '' \
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sed -i \
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-e 's/^\({% set version = "\).*\(" %}\)$/'"\1$VERSION\2/" \
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-e 's/^\({% set sha256 = "\).*\(" %}\)$/'"\1$SHA256\2/" \
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-e 's~^\( *url:\) .*$~\1 '"$URL_FMT~" \
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git push -u $GITHUB_USER $BRANCH
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9292
if $NEW_PR; then
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hub pull-request -b conda-forge:master -F - <<END
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hub pull-request -b conda-forge:main -F - <<END
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$PR_TITLE
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Updating feedstock to release branch

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