Updated e2e tests to support S3 compatible storage bucket from whicyh to download MNISt datasets for disconnected automation

Author: abhijeet-dhumal

.pre-commit-config.yaml

@@ -7,6 +7,7 @@ repos:
     -   id: trailing-whitespace
     -   id: end-of-file-fixer
     -   id: check-yaml
+        args: [--allow-multiple-documents]
     -   id: check-added-large-files
 -   repo: https://github.com/psf/black
     rev: 23.3.0

docs/e2e.md

@@ -108,8 +108,25 @@ Currently the SDK doesn't support tolerations, so e2e tests can't be executed on
   ```
   poetry run pytest -v -s ./tests/e2e -m openshift --timeout=1200
   ```
-  - If the cluster doesn't have NVidia GPU support or GPU nodes have taint then we need to disable NVidia GPU tests by providing proper marker:
-  ```
-  poetry install --with test,docs
-  poetry run pytest -v -s ./tests/e2e/mnist_raycluster_sdk_kind_test.py -m 'not nvidia_gpu'
-  ```
+
+## On OpenShift Disconnected clusters
+
+- In addition to setup phase mentioned above in case of Openshift cluster, Disconnected environment requires following pre-requisites :
+   - Mirror Image registry :
+     - Image mirror registry is used to host set of container images required locally for the applications and services. This ensures to pull images without needing an external network connection. It also ensures continuous operation and deployment capabilities in a network-isolated environment.
+   - PYPI Mirror Index :
+     - When trying to install Python packages in a disconnected environment, the pip command might fail because the connection cannot install packages from external URLs. This issue can be resolved by setting up PIP Mirror Index on separate endpoint in same environment.
+   - S3 compatible storage :
+     - Some of our distributed training examples require an external storage solution so that all nodes can access the same data in disconnected environment (For example: common-datasets and model files).
+     - Minio S3 compatible storage type instance can be deployed in disconnected environment using `/tests/e2e/minio_deployment.yaml` or using support methods in e2e test suite.
+     - The following are environment variables for configuring PIP index URl for accessing the common-python packages required and the S3 or Minio storage for your Ray Train script or interactive session.
+    ```
+    export RAY_IMAGE=quay.io/project-codeflare/ray@sha256:<image-digest> (prefer image digest over image tag in disocnnected environment)
+    PIP_INDEX_URL=https://<bastion-node-endpoint-url>/root/pypi/+simple/ \
+    PIP_TRUSTED_HOST=<bastion-node-endpoint-url> \
+    AWS_DEFAULT_ENDPOINT=<s3-compatible-storage-endpoint-url> \
+    AWS_ACCESS_KEY_ID=<s3-compatible-storage-access-key>  \
+    AWS_SECRET_ACCESS_KEY=<s3-compatible-storage-secret-key>  \
+    AWS_STORAGE_BUCKET=<storage-bucket-name>
+    AWS_STORAGE_BUCKET_MNIST_DIR=<storage-bucket-MNIST-datasets-directory>
+    ```

tests/e2e/local_interactive_sdk_oauth_test.py

@@ -28,6 +28,8 @@ def test_local_interactives(self):
         self.run_local_interactives()
 
     def run_local_interactives(self):
+        ray_image = get_ray_image()
+
         auth = TokenAuthentication(
             token=run_oc_command(["whoami", "--show-token=true"]),
             server=run_oc_command(["whoami", "--show-server=true"]),
@@ -46,6 +48,7 @@ def run_local_interactives(self):
                 worker_cpu_limits=1,
                 worker_memory_requests=1,
                 worker_memory_limits=4,
+                image=ray_image,
                 verify_tls=False,
             )
         )

tests/e2e/minio_deployment.yaml

@@ -0,0 +1,163 @@
+---
+kind: PersistentVolumeClaim
+apiVersion: v1
+metadata:
+  name: minio-pvc
+spec:
+  accessModes:
+    - ReadWriteOnce
+  resources:
+    requests:
+      storage: 20Gi
+  volumeMode: Filesystem
+---
+kind: Secret
+apiVersion: v1
+metadata:
+  name: minio-secret
+stringData:
+  # change the username and password to your own values.
+  # ensure that the user is at least 3 characters long and the password at least 8
+  minio_root_user: minio
+  minio_root_password: minio123
+---
+kind: Deployment
+apiVersion: apps/v1
+metadata:
+  name: minio
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      app: minio
+  template:
+    metadata:
+      creationTimestamp: null
+      labels:
+        app: minio
+    spec:
+      volumes:
+        - name: data
+          persistentVolumeClaim:
+            claimName: minio-pvc
+      containers:
+        - resources:
+            limits:
+              cpu: 250m
+              memory: 1Gi
+            requests:
+              cpu: 20m
+              memory: 100Mi
+          readinessProbe:
+            tcpSocket:
+              port: 9000
+            initialDelaySeconds: 5
+            timeoutSeconds: 1
+            periodSeconds: 5
+            successThreshold: 1
+            failureThreshold: 3
+          terminationMessagePath: /dev/termination-log
+          name: minio
+          livenessProbe:
+            tcpSocket:
+              port: 9000
+            initialDelaySeconds: 30
+            timeoutSeconds: 1
+            periodSeconds: 5
+            successThreshold: 1
+            failureThreshold: 3
+          env:
+            - name: MINIO_ROOT_USER
+              valueFrom:
+                secretKeyRef:
+                  name: minio-secret
+                  key: minio_root_user
+            - name: MINIO_ROOT_PASSWORD
+              valueFrom:
+                secretKeyRef:
+                  name: minio-secret
+                  key: minio_root_password
+          ports:
+            - containerPort: 9000
+              protocol: TCP
+            - containerPort: 9090
+              protocol: TCP
+          imagePullPolicy: IfNotPresent
+          volumeMounts:
+            - name: data
+              mountPath: /data
+              subPath: minio
+          terminationMessagePolicy: File
+          image: >-
+            quay.io/minio/minio:RELEASE.2024-06-22T05-26-45Z
+            # In case of disconnected environment, use image digest instead of tag
+            # For example : <mirror_registry_endpoint>/minio/minio@sha256:6b3abf2f59286b985bfde2b23e37230b466081eda5dccbf971524d54c8e406b5
+          args:
+            - server
+            - /data
+            - --console-address
+            - :9090
+      restartPolicy: Always
+      terminationGracePeriodSeconds: 30
+      dnsPolicy: ClusterFirst
+      securityContext: {}
+      schedulerName: default-scheduler
+  strategy:
+    type: Recreate
+  revisionHistoryLimit: 10
+  progressDeadlineSeconds: 600
+---
+kind: Service
+apiVersion: v1
+metadata:
+  name: minio-service
+spec:
+  ipFamilies:
+    - IPv4
+  ports:
+    - name: api
+      protocol: TCP
+      port: 9000
+      targetPort: 9000
+    - name: ui
+      protocol: TCP
+      port: 9090
+      targetPort: 9090
+  internalTrafficPolicy: Cluster
+  type: ClusterIP
+  ipFamilyPolicy: SingleStack
+  sessionAffinity: None
+  selector:
+    app: minio
+---
+kind: Route
+apiVersion: route.openshift.io/v1
+metadata:
+  name: minio-api
+spec:
+  to:
+    kind: Service
+    name: minio-service
+    weight: 100
+  port:
+    targetPort: api
+  wildcardPolicy: None
+  tls:
+    termination: edge
+    insecureEdgeTerminationPolicy: Redirect
+---
+kind: Route
+apiVersion: route.openshift.io/v1
+metadata:
+  name: minio-ui
+spec:
+  to:
+    kind: Service
+    name: minio-service
+    weight: 100
+  port:
+    targetPort: ui
+  wildcardPolicy: None
+  tls:
+    termination: edge
+    insecureEdgeTerminationPolicy: Redirect

tests/e2e/mnist.py

@@ -15,6 +15,7 @@
 import os
 
 import torch
+import requests
 from pytorch_lightning import LightningModule, Trainer
 from pytorch_lightning.callbacks.progress import TQDMProgressBar
 from torch import nn
@@ -23,9 +24,15 @@
 from torchmetrics import Accuracy
 from torchvision import transforms
 from torchvision.datasets import MNIST
+import gzip
+import shutil
+from minio import Minio
+
 
 PATH_DATASETS = os.environ.get("PATH_DATASETS", ".")
 BATCH_SIZE = 256 if torch.cuda.is_available() else 64
+
+local_mnist_path = os.path.dirname(os.path.abspath(__file__))
 # %%
 
 print("prior to running the trainer")
@@ -35,6 +42,25 @@
 print("ACCELERATOR: is ", os.getenv("ACCELERATOR"))
 ACCELERATOR = os.getenv("ACCELERATOR")
 
+STORAGE_BUCKET_EXISTS = "AWS_DEFAULT_ENDPOINT" in os.environ
+print("STORAGE_BUCKET_EXISTS: ", STORAGE_BUCKET_EXISTS)
+
+print(
+    f'Storage_Bucket_Default_Endpoint : is {os.environ.get("AWS_DEFAULT_ENDPOINT")}'
+    if "AWS_DEFAULT_ENDPOINT" in os.environ
+    else ""
+)
+print(
+    f'Storage_Bucket_Name : is {os.environ.get("AWS_STORAGE_BUCKET")}'
+    if "AWS_STORAGE_BUCKET" in os.environ
+    else ""
+)
+print(
+    f'Storage_Bucket_Mnist_Directory : is {os.environ.get("AWS_STORAGE_BUCKET_MNIST_DIR")}'
+    if "AWS_STORAGE_BUCKET_MNIST_DIR" in os.environ
+    else ""
+)
+
 
 class LitMNIST(LightningModule):
     def __init__(self, data_dir=PATH_DATASETS, hidden_size=64, learning_rate=2e-4):
@@ -114,19 +140,74 @@ def configure_optimizers(self):
     def prepare_data(self):
         # download
         print("Downloading MNIST dataset...")
-        MNIST(self.data_dir, train=True, download=True)
-        MNIST(self.data_dir, train=False, download=True)
+
+        if (
+            STORAGE_BUCKET_EXISTS
+            and os.environ.get("AWS_DEFAULT_ENDPOINT") != ""
+            and os.environ.get("AWS_DEFAULT_ENDPOINT") != None
+        ):
+            print("Using storage bucket to download datasets...")
+
+            dataset_dir = os.path.join(self.data_dir, "MNIST/raw")
+            endpoint = os.environ.get("AWS_DEFAULT_ENDPOINT")
+            access_key = os.environ.get("AWS_ACCESS_KEY_ID")
+            secret_key = os.environ.get("AWS_SECRET_ACCESS_KEY")
+            bucket_name = os.environ.get("AWS_STORAGE_BUCKET")
+
+            client = Minio(
+                endpoint,
+                access_key=access_key,
+                secret_key=secret_key,
+                cert_check=False,
+            )
+
+            if not os.path.exists(dataset_dir):
+                os.makedirs(dataset_dir)
+            else:
+                print(f"Directory '{dataset_dir}' already exists")
+
+            # To download datasets from storage bucket's specific directory, use prefix to provide directory name
+            prefix = os.environ.get("AWS_STORAGE_BUCKET_MNIST_DIR")
+            # download all files from prefix folder of storage bucket recursively
+            for item in client.list_objects(bucket_name, prefix=prefix, recursive=True):
+                file_name = item.object_name[len(prefix) + 1 :]
+                dataset_file_path = os.path.join(dataset_dir, file_name)
+                if not os.path.exists(dataset_file_path):
+                    client.fget_object(bucket_name, item.object_name, dataset_file_path)
+                else:
+                    print(f"File-path '{dataset_file_path}' already exists")
+                # Unzip files
+                with gzip.open(dataset_file_path, "rb") as f_in:
+                    with open(dataset_file_path.split(".")[:-1][0], "wb") as f_out:
+                        shutil.copyfileobj(f_in, f_out)
+                # delete zip file
+                os.remove(dataset_file_path)
+                unzipped_filepath = dataset_file_path.split(".")[0]
+                if os.path.exists(unzipped_filepath):
+                    print(
+                        f"Unzipped and saved dataset file to path - {unzipped_filepath}"
+                    )
+            download_datasets = False
+
+        else:
+            print("Using default MNIST mirror reference to download datasets...")
+            download_datasets = True
+
+        MNIST(self.data_dir, train=True, download=download_datasets)
+        MNIST(self.data_dir, train=False, download=download_datasets)
 
     def setup(self, stage=None):
         # Assign train/val datasets for use in dataloaders
         if stage == "fit" or stage is None:
-            mnist_full = MNIST(self.data_dir, train=True, transform=self.transform)
+            mnist_full = MNIST(
+                self.data_dir, train=True, transform=self.transform, download=False
+            )
             self.mnist_train, self.mnist_val = random_split(mnist_full, [55000, 5000])
 
         # Assign test dataset for use in dataloader(s)
         if stage == "test" or stage is None:
             self.mnist_test = MNIST(
-                self.data_dir, train=False, transform=self.transform
+                self.data_dir, train=False, transform=self.transform, download=False
             )
 
     def train_dataloader(self):
@@ -145,7 +226,7 @@ def test_dataloader(self):
 
 # Init DataLoader from MNIST Dataset
 
-model = LitMNIST()
+model = LitMNIST(data_dir=local_mnist_path)
 
 print("GROUP: ", int(os.environ.get("GROUP_WORLD_SIZE", 1)))
 print("LOCAL: ", int(os.environ.get("LOCAL_WORLD_SIZE", 1)))

tests/e2e/mnist_pip_requirements.txt

@@ -1,3 +1,4 @@
 pytorch_lightning==1.9.5
 torchmetrics==0.9.1
 torchvision==0.12.0
+minio

tests/e2e/mnist_raycluster_sdk_aw_kind_test.py

@@ -19,6 +19,7 @@ def setup_method(self):
 
     def teardown_method(self):
         delete_namespace(self)
+        delete_kueue_resources(self)
 
     def test_mnist_ray_cluster_sdk_kind(self):
         self.setup_method()
@@ -77,7 +78,7 @@ def assert_jobsubmit_withoutlogin_kind(self, cluster, accelerator, number_of_gpu
             runtime_env={
                 "working_dir": "./tests/e2e/",
                 "pip": "./tests/e2e/mnist_pip_requirements.txt",
-                "env_vars": {"ACCELERATOR": accelerator},
+                "env_vars": get_setup_env_variables(ACCELERATOR=accelerator),
             },
             entrypoint_num_gpus=number_of_gpus,
         )

tests/e2e/mnist_raycluster_sdk_kind_test.py

@@ -77,7 +77,7 @@ def assert_jobsubmit_withoutlogin_kind(self, cluster, accelerator, number_of_gpu
             runtime_env={
                 "working_dir": "./tests/e2e/",
                 "pip": "./tests/e2e/mnist_pip_requirements.txt",
-                "env_vars": {"ACCELERATOR": accelerator},
+                "env_vars": get_setup_env_variables(ACCELERATOR=accelerator),
             },
             entrypoint_num_gpus=number_of_gpus,
         )