Merge 0c4b0c5 into 39bfcdf

Author: tobiasraabe

.github/workflows/main.yml

@@ -27,20 +27,22 @@ jobs:
       fail-fast: false
       matrix:
         os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
-        python-version: ['3.7', '3.8', '3.9', '3.10', '3.11']
+        python-version: ['3.8', '3.9', '3.10', '3.11']
 
     steps:
       - uses: actions/checkout@v3
-      - uses: conda-incubator/setup-[email protected]
+      - uses: mamba-org/setup-micromamba@v1
         with:
-          auto-update-conda: false
-          python-version: ${{ matrix.python-version }}
-          channels: conda-forge,nodefaults
-          miniforge-variant: Mambaforge
-
-      - name: Install core dependencies.
-        shell: bash -l {0}
-        run: mamba install -c conda-forge tox-conda coverage
+          environment-name: gha-testing
+          condarc: |
+            channels:
+              - nodefaults
+              - conda-forge
+          create-args: >-
+            python=${{ matrix.python-version }}
+            mamba
+            tox-conda
+          cache-environment: true
 
       # Unit, integration, and end-to-end tests.
 
@@ -49,7 +51,7 @@ jobs:
         run: tox -e pytest -- -m "unit or (not integration and not end_to_end)" --cov=src --cov=tests --cov-report=xml -n auto
 
       - name: Upload coverage report for unit tests and doctests.
-        if: runner.os == 'Linux' && matrix.python-version == '3.8'
+        if: runner.os == 'Linux' && matrix.python-version == '3.10'
         shell: bash -l {0}
         run: bash <(curl -s https://codecov.io/bash) -F unit -c
 
@@ -58,7 +60,7 @@ jobs:
         run: tox -e pytest -- -m integration --cov=src --cov=tests --cov-report=xml -n auto
 
       - name: Upload coverage reports of integration tests.
-        if: runner.os == 'Linux' && matrix.python-version == '3.8'
+        if: runner.os == 'Linux' && matrix.python-version == '3.10'
         shell: bash -l {0}
         run: bash <(curl -s https://codecov.io/bash) -F integration -c
 
@@ -67,6 +69,6 @@ jobs:
         run: tox -e pytest -- -m end_to_end --cov=src --cov=tests --cov-report=xml -n auto
 
       - name: Upload coverage reports of end-to-end tests.
-        if: runner.os == 'Linux' && matrix.python-version == '3.8'
+        if: runner.os == 'Linux' && matrix.python-version == '3.10'
         shell: bash -l {0}
         run: bash <(curl -s https://codecov.io/bash) -F end_to_end -c

.pre-commit-config.yaml

@@ -21,16 +21,13 @@ repos:
     hooks:
     -   id: python-check-blanket-noqa
     -   id: python-check-mock-methods
-    -   id: python-no-eval
-        exclude: expression.py
     -   id: python-no-log-warn
-    -   id: python-use-type-annotations
     -   id: text-unicode-replacement-char
 -   repo: https://github.com/asottile/reorder-python-imports
     rev: v3.9.0
     hooks:
     -   id: reorder-python-imports
-        args: [--py37-plus, --add-import, 'from __future__ import annotations']
+        args: [--py38-plus, --add-import, 'from __future__ import annotations']
 -   repo: https://github.com/asottile/setup-cfg-fmt
     rev: v2.3.0
     hooks:
@@ -52,7 +49,7 @@ repos:
     rev: 1.5.0
     hooks:
     -   id: interrogate
-        args: [-v, --fail-under=75]
+        args: [-vv, --fail-under=75]
         exclude: ^(tests/|docs/|scripts/)
 -   repo: https://github.com/pre-commit/mirrors-mypy
     rev: 'v1.3.0'

MANIFEST.in

@@ -1,6 +1,7 @@
 include CITATION
 include LICENSE
 
+recursive-include src *.pyi
 recursive-include src py.typed
 
 exclude .coveragerc

docs/rtd_environment.yml

@@ -3,7 +3,7 @@ channels:
   - nodefaults
 
 dependencies:
-  - python >=3.7
+  - python >=3.8
   - pip
   - setuptools_scm
   - toml
@@ -25,11 +25,12 @@ dependencies:
   - click-default-group
   - networkx >=2.4
   - pluggy
-  - pony >=0.7.15
-  - pybaum >=0.1.1
+  - optree >=0.9
   - pexpect
   - rich
+  - sqlalchemy >=1.4.36
   - tomli >=1.0.0
+  - typing_extensions
 
   - pip:
     - ../

docs/source/_static/images/markers.svg

@@ -10,10 +10,6 @@ $ pytask markers
 │                                  │ tutorial for more information:          │
 │                                  │ <a href="https://bit.ly/3JlxylS">https://bit.ly/3JlxylS</a>.                 │
 │                                  │                                         │
-│ pytask.mark.parametrize          │ The marker for pytest&#x27;s way of          │
-│                                  │ repeating tasks which is explained in   │
-│                                  │ this tutorial: <a href="https://bit.ly/3uqZqkk">https://bit.ly/3uqZqkk</a>.  │
-│                                  │                                         │
 │ pytask.mark.persist              │ Prevent execution of a task if all      │
 │                                  │ products exist and even ifsomething has │
 │                                  │ changed (dependencies, source file,     │

docs/source/_static/md/markers.md

@@ -5,7 +5,26 @@ chronological order. Releases follow [semantic versioning](https://semver.org/)
 releases are available on [PyPI](https://pypi.org/project/pytask) and
 [Anaconda.org](https://anaconda.org/conda-forge/pytask).
 
-## 0.3.2 - 2023-xx-xx
+## 0.4.0 - 2023-xx-xx
+
+- {pull}`323` remove Python 3.7 support and use a new Github action to provide mamba.
+- {pull}`384` allows to parse dependencies from every function argument if `depends_on`
+  is not present.
+- {pull}`387` replaces pony with sqlalchemy.
+- {pull}`391` removes `@pytask.mark.parametrize`.
+- {pull}`394` allows to add products with {obj}`typing.Annotation` and
+  {obj}`~pytask.Product`.
+- {pull}`395` refactors all occurrences of pybaum to {mod}`_pytask.tree_util`.
+- {pull}`396` replaces pybaum with optree and adds paths to the name of
+  {class}`pytask.PythonNode`'s allowing for better hashing.
+- {pull}`397` adds support for {class}`typing.NamedTuple` and attrs classes in
+  `@pytask.mark.task(kwargs=...)`.
+- {pull}`398` deprecates the decorators `@pytask.mark.depends_on` and
+  `@pytask.mark.produces`.
+- {pull}`402` replaces ABCs with protocols allowing for more flexibility for users
+  implementing their own nodes.
+
+## 0.3.2 - 2023-06-07
 
 - {pull}`345` updates the version numbers in animations.
 - {pull}`352` publishes `db` that is required by pytask-environment.

docs/source/changes.md

@@ -14,7 +14,6 @@ maxdepth: 1
 migrating_from_scripts_to_pytask
 invoking_pytask_extended
 capture_warnings
-repeating_tasks_with_different_inputs_the_pytest_way
 how_to_influence_build_order
 how_to_write_a_plugin
 ```