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lines changed Original file line number Diff line number Diff line change @@ -615,7 +615,8 @@ def vcf_to_zarrs(
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specified ploidy will raise an exception.
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max_alt_alleles
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The (maximum) number of alternate alleles in the VCF file. Any records with more than
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- this number of alternate alleles will have the extra alleles dropped.
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+ this number of alternate alleles will have the extra alleles dropped (the `variant_allele`
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+ variable will be truncated). Call genotype fields will however be unaffected.
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fields
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Extra fields to extract data for. A list of strings, with ``INFO`` or ``FORMAT`` prefixes.
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Wildcards are permitted too, for example: ``["INFO/*", "FORMAT/DP"]``.
@@ -782,7 +783,8 @@ def vcf_to_zarr(
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specified ploidy will raise an exception.
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max_alt_alleles
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The (maximum) number of alternate alleles in the VCF file. Any records with more than
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- this number of alternate alleles will have the extra alleles dropped.
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+ this number of alternate alleles will have the extra alleles dropped (the `variant_allele`
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+ variable will be truncated). Call genotype fields will however be unaffected.
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fields
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Extra fields to extract data for. A list of strings, with ``INFO`` or ``FORMAT`` prefixes.
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Wildcards are permitted too, for example: ``["INFO/*", "FORMAT/DP"]``.
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