update cfg

Author: daletovar

setup.cfg

@@ -59,7 +59,7 @@ ignore =
 profile = black
 default_section = THIRDPARTY
 known_first_party = sgkit
-known_third_party = dask,fire,glow,hail,hypothesis,invoke,msprime,numpy,pandas,pkg_resources,pyspark,pytest,setuptools,sgkit_plink,xarray,yaml,zarr
+known_third_party = dask,fire,glow,hail,hypothesis,invoke,msprime,numba,numpy,pandas,pkg_resources,pyspark,pytest,setuptools,sgkit_plink,xarray,yaml,zarr
 multi_line_output = 3
 include_trailing_comma = True
 force_grid_wrap = 0

sgkit/stats/popgen.py

@@ -17,7 +17,6 @@ def diversity(
     n_pairs = an * (an - 1) / 2
     n_same = (ac * (ac - 1) / 2).sum(axis=1)
     n_diff = n_pairs - n_same
-    # Let's ignore missing data and division by zero for now.
     pi = n_diff / n_pairs
     # Because we're not providing any arguments on windowing, etc,
     # we return the total over the whole region. Maybe this isn't
@@ -45,7 +44,6 @@ def divergence(
     n_pairs = an1 * an2
     n_same = (ac1 * ac2).sum(axis=1)
     n_diff = n_pairs - n_same
-    # Ignore missing data and division by zero for now.
     div = n_diff / n_pairs
     return div.sum()  # type: ignore[no-any-return]