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PR 100: [WIP] Popgen stats #143

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quansight-bot opened this issue Aug 27, 2020 · 0 comments
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PR 100: [WIP] Popgen stats #143

quansight-bot opened this issue Aug 27, 2020 · 0 comments

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quansight-bot commented Aug 27, 2020

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  1. adds [[[[[[@jeromekelleher](https://github.com/jeromekelleher)](https://github.com/jeromekelleher)](https://github.com/jeromekelleher)](https://github.com/jeromekelleher)](https://github.com/jeromekelleher)](https://github.com/jeromekelleher)'s code for converting from tskit trees to sgkit datasets, diversity, and divergence.
  2. adds some minimal tests for the popgen stats.

Going forward in this PR I'd like to add:

  • a test for ts_to_dataset
  • windowing for popgen stats

I might save Fst and the others for a different PR.

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