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dask was released yesterday version: 2.26.0 and it breaks our test_read_vcfzarr. That same test works fine on 2.25.0.
dask
test_read_vcfzarr
2.25.0
Originally posted by @ravwojdyla in https://github.com/pystatgen/sgkit/pull/228#issuecomment-691538352
The issue seems to be that:
ds["variant_id_mask"] = ( [DIM_VARIANT], variants_id == ".", )
returns (['variants'], False) instead of array of bool as the 2nd element.
(['variants'], False)
The text was updated successfully, but these errors were encountered:
Further:
import dask.array as da a = da.from_array(["a", "b", ".", "e"]) print(a == ".") # 2.26.0: False # 2.25.0: dask.array<eq, shape=(4,), dtype=bool, chunksize=(4,), chunktype=numpy.ndarray>
That's a rather big change.
Sorry, something went wrong.
I have reported this as a bug in Dask (and will continue analysis there): dask/dask#6631
was fixed via #246 closing
ravwojdyla
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dask
was released yesterday version: 2.26.0 and it breaks ourtest_read_vcfzarr
. That same test works fine on2.25.0
.Originally posted by @ravwojdyla in https://github.com/pystatgen/sgkit/pull/228#issuecomment-691538352
The issue seems to be that:
returns
(['variants'], False)
instead of array of bool as the 2nd element.The text was updated successfully, but these errors were encountered: