Merge main into rc/3.5.2

Author: thomasp85

.github/workflows/R-CMD-check.yaml

@@ -10,7 +10,9 @@ on:
   pull_request:
     branches: [main, master]
 
-name: R-CMD-check
+name: R-CMD-check.yaml
+
+permissions: read-all
 
 jobs:
   R-CMD-check:
@@ -25,17 +27,15 @@ jobs:
           - {os: macos-latest,   r: 'release'}
 
           - {os: windows-latest, r: 'release'}
-          # Use 3.6 to trigger usage of RTools35
-          - {os: windows-latest, r: '3.6'}
-          # use 4.1 to check with rtools40's older compiler
-          - {os: windows-latest, r: '4.1'}
+          # use 4.0 or 4.1 to check with rtools40's older compiler
+          - {os: windows-latest, r: 'oldrel-4'}
 
-          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-latest,   r: 'release'}
-          - {os: ubuntu-latest,   r: 'oldrel-1'}
-          - {os: ubuntu-latest,   r: 'oldrel-2'}
-          - {os: ubuntu-latest,   r: 'oldrel-3'}
-          - {os: ubuntu-latest,   r: 'oldrel-4'}
+          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,  r: 'release'}
+          - {os: ubuntu-latest,  r: 'oldrel-1'}
+          - {os: ubuntu-latest,  r: 'oldrel-2'}
+          - {os: ubuntu-latest,  r: 'oldrel-3'}
+          - {os: ubuntu-latest,  r: 'oldrel-4'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -48,7 +48,7 @@ jobs:
       VDIFFR_LOG_PATH: "../vdiffr.Rout.fail"
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -63,10 +63,11 @@ jobs:
           cache-version: 3
           extra-packages: >
             any::rcmdcheck,
-            Hmisc=?ignore-before-r=4.1.0,
-            quantreg=?ignore-before-r=3.6.0,
+            Hmisc=?ignore-before-r=4.2.0,
+            quantreg=?ignore-before-r=4.3.0
           needs: check
 
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

.github/workflows/pkgdown.yaml

@@ -9,7 +9,9 @@ on:
     types: [published]
   workflow_dispatch:
 
-name: pkgdown
+name: pkgdown.yaml
+
+permissions: read-all
 
 jobs:
   pkgdown:
@@ -19,8 +21,10 @@ jobs:
       group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -39,7 +43,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@v4.4.1
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
         with:
           clean: false
           branch: gh-pages

.github/workflows/pr-commands.yaml

@@ -4,7 +4,9 @@ on:
   issue_comment:
     types: [created]
 
-name: Commands
+name: pr-commands.yaml
+
+permissions: read-all
 
 jobs:
   document:
@@ -13,8 +15,10 @@ jobs:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/pr-fetch@v2
         with:
@@ -50,8 +54,10 @@ jobs:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/pr-fetch@v2
         with:

.github/workflows/test-coverage.yaml

@@ -6,7 +6,9 @@ on:
   pull_request:
     branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -15,36 +17,45 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v4
+        with:
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |
           ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
 
       - name: Upload test results
         if: failure()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: coverage-test-failures
           path: ${{ runner.temp }}/package

CONTRIBUTING.md

@@ -61,20 +61,19 @@ Each of these steps are described in more detail below. This might feel
 overwhelming the first time you get set up, but it gets easier with practice. 
 If you get stuck at any point, please reach out for help on the [ggplot2-dev](https://groups.google.com/forum/#!forum/ggplot2-dev) mailing list.
 
-If you're not familiar with git or github, please start by reading <http://r-pkgs.had.co.nz/git.html>
+If you're not familiar with git or github, please start by reading <https://r-pkgs.org/software-development-practices.html>
 
 <!--
 * [ ] Motivate the change in one paragraph, and include it in NEWS.
       In parentheses, reference your github user name and this issue:
       `(@hadley, #1234)`
 * [ ] Check pull request only includes relevant changes.
-* [ ] Use the [official style](http://adv-r.had.co.nz/Style.html).
+* [ ] Use the [official style](https://style.tidyverse.org).
 * [ ] Update documentation and re-run roxygen2
 * [ ] Add test, if bug in non-graphical function
 * [ ] Add visual test, if bug in graphical function
 * [ ] Add minimal example, if new graphical feature
 
-See http://docs.ggplot2.org/dev/vignettes/development.html for more details.
 --->
 
 Pull requests will be evaluated against a seven point checklist:
@@ -100,20 +99,16 @@ Pull requests will be evaluated against a seven point checklist:
     and don't submit any others until the first one has been processed.
 
 1.  __Use ggplot2 coding style__. Please follow the
-    [official tidyverse style](http://style.tidyverse.org). Maintaining
+    [official tidyverse style](https://style.tidyverse.org). Maintaining
     a consistent style across the whole code base makes it much easier to
     jump into the code. If you're modifying existing ggplot2 code that
     doesn't follow the style guide, a separate pull request to fix the
     style would be greatly appreciated.
 
 1.  If you're adding new parameters or a new function, you'll also need
-    to document them with [roxygen](https://github.com/klutometis/roxygen).
+    to document them with [roxygen2](https://github.com/r-lib/roxygen2).
     Make sure to re-run `devtools::document()` on the code before submitting.
 
-    Currently, ggplot2 uses the development version of roxygen2, which you
-    can get with `install_github("klutometis/roxygen")`. This will be
-    available on CRAN in the near future.
-
 1.  If fixing a bug or adding a new feature to a non-graphical function,
     please add a [testthat](https://github.com/r-lib/testthat) unit test.
 

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: ggplot2
-Version: 3.5.2.9000
 Title: Create Elegant Data Visualisations Using the Grammar of Graphics
+Version: 3.5.2.9000
 Authors@R: c(
     person("Hadley", "Wickham", , "[email protected]", role = "aut",
            comment = c(ORCID = "0000-0003-4757-117X")),
@@ -30,24 +30,21 @@ License: MIT + file LICENSE
 URL: https://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2
 BugReports: https://github.com/tidyverse/ggplot2/issues
 Depends:
-    R (>= 3.5)
-Imports: 
+    R (>= 4.0)
+Imports:
     cli,
-    glue,
     grDevices,
     grid,
-    gtable (>= 0.1.1),
+    gtable (>= 0.3.6),
     isoband,
     lifecycle (> 1.0.1),
-    MASS,
-    mgcv,
     rlang (>= 1.1.0),
     scales (>= 1.3.0),
     stats,
-    tibble,
     vctrs (>= 0.6.0),
     withr (>= 2.5.0)
 Suggests:
+    broom,
     covr,
     dplyr,
     ggplot2movies,
@@ -56,6 +53,8 @@ Suggests:
     knitr,
     mapproj,
     maps,
+    MASS,
+    mgcv,
     multcomp,
     munsell,
     nlme,
@@ -67,20 +66,22 @@ Suggests:
     rpart,
     sf (>= 0.7-3),
     svglite (>= 2.1.2),
-    testthat (>= 3.1.2),
+    testthat (>= 3.1.5),
+    tibble,
     vdiffr (>= 1.0.6),
     xml2
-Enhances: 
+Enhances:
     sp
-VignetteBuilder: 
+VignetteBuilder:
     knitr
 Config/Needs/website: ggtext, tidyr, forcats, tidyverse/tidytemplate
 Config/testthat/edition: 3
+Config/usethis/last-upkeep: 2024-10-24
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.3.2
-Collate: 
+Collate:
     'ggproto.R'
     'ggplot-global.R'
     'aaa-.R'
@@ -126,15 +127,15 @@ Collate:
     'facet-grid-.R'
     'facet-null.R'
     'facet-wrap.R'
-    'fortify-lm.R'
     'fortify-map.R'
-    'fortify-multcomp.R'
+    'fortify-models.R'
     'fortify-spatial.R'
     'fortify.R'
     'stat-.R'
     'geom-abline.R'
     'geom-rect.R'
     'geom-bar.R'
+    'geom-tile.R'
     'geom-bin2d.R'
     'geom-blank.R'
     'geom-boxplot.R'
@@ -151,7 +152,6 @@ Collate:
     'geom-density2d.R'
     'geom-dotplot.R'
     'geom-errorbar.R'
-    'geom-errorbarh.R'
     'geom-freqpoly.R'
     'geom-function.R'
     'geom-hex.R'
@@ -168,7 +168,6 @@ Collate:
     'geom-smooth.R'
     'geom-spoke.R'
     'geom-text.R'
-    'geom-tile.R'
     'geom-violin.R'
     'geom-vline.R'
     'ggplot2-package.R'
@@ -243,10 +242,12 @@ Collate:
     'scales-.R'
     'stat-align.R'
     'stat-bin.R'
+    'stat-summary-2d.R'
     'stat-bin2d.R'
     'stat-bindot.R'
     'stat-binhex.R'
     'stat-boxplot.R'
+    'stat-connect.R'
     'stat-contour.R'
     'stat-count.R'
     'stat-density-2d.R'
@@ -255,6 +256,7 @@ Collate:
     'stat-ellipse.R'
     'stat-function.R'
     'stat-identity.R'
+    'stat-manual.R'
     'stat-qq-line.R'
     'stat-qq.R'
     'stat-quantilemethods.R'
@@ -263,7 +265,6 @@ Collate:
     'stat-smooth-methods.R'
     'stat-smooth.R'
     'stat-sum.R'
-    'stat-summary-2d.R'
     'stat-summary-bin.R'
     'stat-summary-hex.R'
     'stat-summary.R'
@@ -274,10 +275,10 @@ Collate:
     'theme.R'
     'theme-defaults.R'
     'theme-current.R'
+    'theme-sub.R'
     'utilities-break.R'
     'utilities-grid.R'
     'utilities-help.R'
-    'utilities-matrix.R'
     'utilities-patterns.R'
     'utilities-resolution.R'
     'utilities-tidy-eval.R'

LICENSE.md

@@ -1,6 +1,6 @@
 # MIT License
 
-Copyright (c) 2020 ggplot2 authors
+Copyright (c) 2024 ggplot2 core developer team
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal