Skip to content

Create bmont.md #2694

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 12 commits into
base: master
Choose a base branch
from
Open

Create bmont.md #2694

Changes from 7 commits
Commits
Show all changes
12 commits
Select commit Hold shift + click to select a range
1ab4bd6
Create bmont.md
Astghik-S Apr 2, 2025
0de1de2
Update bmont.md
Astghik-S Apr 2, 2025
f1585a9
Merge branch 'master' into patch-1
nataled Apr 10, 2025
cfc2f88
Update bmont.md
Astghik-S Apr 14, 2025
8105bed
Update bmont.md
Astghik-S Apr 14, 2025
4476643
Update ontology/bmont.md
Astghik-S Apr 24, 2025
232d254
Update after the review bmont.md
Astghik-S Apr 24, 2025
34fb23c
Merge branch 'master' into patch-1
deepakunni3 Apr 25, 2025
f1b1f19
Update ontology/bmont.md
Astghik-S Apr 25, 2025
8c0dd03
Update ontology/bmont.md
Astghik-S Apr 25, 2025
b663315
Update ontology/bmont.md
Astghik-S Apr 25, 2025
3302725
Update ontology/bmont.md
Astghik-S Apr 25, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
38 changes: 38 additions & 0 deletions ontology/bmont.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
---
layout: ontology_detail
layout: ontology_detail
id: bmont
title: Biomarker Ontology
browsers:
- title: BioPortal Ontology Browser
label: BioPortal
url: [https://bioportal.bioontology.org/ontologies/BMONT]
contact:
email: [email protected]
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@Astghik-S: Unfortunately this is a blocker. The contact MUST be a person who can be responsive to community requests and is active in the development and maintenance of the ontology. Perhaps you are the right person since you are the ontology submitter and the one authoring the metadata record?

github: akodamullil
label: Alpha Tom Kodamullil
orcid: 0000-0001-9896-3531
description: An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects.
domain: health
homepage: https://github.com/SCAI-BIO/BiomarkerOntology
in_foundry_order:
license:
label: CC BY 4.0
url: http://creativecommons.org/licenses/by/4.0/
preferredPrefix: BMONT
products:
- id: BMONT.owl
- id: bmont.obo
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I see bmont.obo listed here as a product but there is no corresponding file in the https://github.com/SCAI-BIO/BiomarkerOntology repository. Same applies to BMONT.owl.

Could you please confirm where these files are located?

description: Includes axioms linking to other ontologies, but no imports of those ontologies
publications:
- id:
title:
- id:
title: Using ontologies to describe mouse phenotypes
repository: https://github.com/SCAI-BIO/BiomarkerOntology
tracker: https://github.com/SCAI-BIO/BiomarkerOntology/issue
usages:
- description: BMONT is proposed to be used for improving biomarker identification tasks, as well as a supportive integratable tool for abundant AI techniques, such as Machine Learning (ML) and Large Learning Model (LLM).
Comment on lines +27 to +28
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

When we describe usage, we do want documented usage. i.e. the use of BMONT and terms from BMONT in associations, publications, data portal, etc. If there are no documented usage then please remove the usages section.

Suggested change
usages:
- description: BMONT is proposed to be used for improving biomarker identification tasks, as well as a supportive integratable tool for abundant AI techniques, such as Machine Learning (ML) and Large Learning Model (LLM).


activity_status: true
---