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PMCC - Bioinformatics Core

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  1. janis janis Public

    [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

    Python 43 13

  2. janis-core janis-core Public

    Core python modules for Janis Pipeline workflow assistant

    Common Workflow Language 5 9

  3. python-wdlgen python-wdlgen Public

    Python classes to loosely generate WDL

    Python 3 2

  4. janis-workshops janis-workshops Public

    Workshops for the Janis pipeline framework

    Python 3 4

  5. janis-bioinformatics janis-bioinformatics Public

    Repository of bioinformatics tools for the pipelines module

    Python 2 11

  6. janis-pipelines janis-pipelines Public

    Example pipelines with Janis

    Common Workflow Language 2 6

Repositories

Showing 10 of 22 repositories
  • nextflow-nf-core-workshop-2025_v2 Public Forked from PMCC-BioinformaticsCore/nextflow-nf-core-workshop-2025

    Nextflow and nf-core workshop 2025

    PMCC-BioinformaticsCore/nextflow-nf-core-workshop-2025_v2’s past year of commit activity
    0 MIT 2 0 0 Updated May 2, 2025
  • nextflow-nf-core-workshop-2025 Public

    Nextflow and nf-core workshop 2025

    PMCC-BioinformaticsCore/nextflow-nf-core-workshop-2025’s past year of commit activity
    0 MIT 2 0 1 Updated Apr 17, 2025
  • AI_Beyond_Omics_Workshop Public Forked from Sanduni-P/AI_Beyond_Omics_Workshop

    This workshop is scheduled to take place at the The annual Australian Bioinformatics and Computational Biology Society (ABACBS) conference 2024 at University of Sydney on 7th November 2024. This workshop aims to explore the broad applications of artificial intelligence (AI) technologies that are relevant to bioinformaticians.

    PMCC-BioinformaticsCore/AI_Beyond_Omics_Workshop’s past year of commit activity
    SCSS 0 1 0 0 Updated Nov 6, 2024
  • nextflow-intro-workshop Public

    Introduction to Nextflow and Running nf-core Workflows Workshop

    PMCC-BioinformaticsCore/nextflow-intro-workshop’s past year of commit activity
    CSS 0 MIT 0 0 0 Updated Jun 23, 2024
  • dinoflow Public

    Nextflow workflow for MAC-seq

    PMCC-BioinformaticsCore/dinoflow’s past year of commit activity
    Groovy 0 MIT 1 0 0 Updated Feb 5, 2024
  • janis-core Public

    Core python modules for Janis Pipeline workflow assistant

    PMCC-BioinformaticsCore/janis-core’s past year of commit activity
    Common Workflow Language 5 GPL-3.0 9 23 8 Updated Dec 6, 2023
  • janis Public

    [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

    PMCC-BioinformaticsCore/janis’s past year of commit activity
    Python 43 GPL-3.0 13 13 2 Updated Sep 17, 2023
  • janis-pipelines Public

    Example pipelines with Janis

    PMCC-BioinformaticsCore/janis-pipelines’s past year of commit activity
    Common Workflow Language 2 GPL-3.0 6 0 0 Updated Aug 30, 2023
  • janis-translate-examples Public

    Examples of using Janis to translate Galaxy & CWL workflows to Nextflow

    PMCC-BioinformaticsCore/janis-translate-examples’s past year of commit activity
    R 2 GPL-3.0 1 0 0 Updated Aug 24, 2023
  • janis-assistant Public

    A language and engine agnostic workflow runner for Janis

    PMCC-BioinformaticsCore/janis-assistant’s past year of commit activity
    Python 2 GPL-3.0 2 4 1 Updated Jul 12, 2023
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