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TomNicholasTomNicholas
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Merge xarray-contrib/datatree#20 from jhamman/ci
Add basic CI setup
2 parents c0a75b5 + 2709f18 commit 495f539

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+222
-16
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‎.github/dependabot.yml

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version: 2
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updates:
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- package-ecosystem: pip
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directory: "/"
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schedule:
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interval: daily
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- package-ecosystem: "github-actions"
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directory: "/"
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schedule:
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# Check for updates to GitHub Actions every weekday
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interval: "daily"

‎.github/workflows/main.yaml

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name: CI
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on:
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push:
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branches: "*"
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pull_request:
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branches: main
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schedule:
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- cron: "0 0 * * *"
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jobs:
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lint:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/[email protected]
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- uses: actions/[email protected]
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- uses: pre-commit/[email protected]
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test:
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name: ${{ matrix.python-version }}-build
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: [3.7, 3.8, 3.9]
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steps:
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- uses: actions/[email protected]
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- uses: conda-incubator/setup-miniconda@v2
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with:
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mamba-version: "*"
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auto-update-conda: true
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python-version: ${{ matrix.python-version }}
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auto-activate-base: false
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activate-environment: datatree
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environment-file: ci/environment.yml
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- name: Conda info
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shell: bash -l {0}
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run: conda info
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- name: Conda list
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shell: bash -l {0}
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run: conda list
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- name: Install datatree
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shell: bash -l {0}
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run: |
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python -m pip install --no-deps -e .
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python -m pip list
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- name: Running Tests
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shell: bash -l {0}
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run: |
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python -m pytest --cov=./ --cov-report=xml --verbose
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# - name: Upload coverage to Codecov
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# uses: codecov/[email protected]
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# if: ${{ matrix.python-version }} == 3.8
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# with:
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# file: ./coverage.xml
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# fail_ci_if_error: false
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test-upstream:
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name: ${{ matrix.python-version }}-dev-build
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: [3.8, 3.9]
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steps:
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- uses: actions/[email protected]
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- uses: conda-incubator/setup-miniconda@v2
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with:
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mamba-version: "*"
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auto-update-conda: true
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python-version: ${{ matrix.python-version }}
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auto-activate-base: false
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activate-environment: datatree
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environment-file: ci/environment.yml
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- name: Conda info
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shell: bash -l {0}
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run: conda info
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- name: Conda list
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shell: bash -l {0}
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run: conda list
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- name: Install dev reqs
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shell: bash -l {0}
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run: |
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python -m pip install --no-deps --upgrade \
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git+https://github.com/pydata/xarray \
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git+https://github.com/Unidata/netcdf4-python \
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git+https://github.com/c0fec0de/anytree
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python -m pip install --no-deps -e .
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python -m pip list
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- name: Running Tests
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shell: bash -l {0}
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run: |
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python -m pytest --verbose

‎.github/workflows/pypipublish.yaml

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name: Upload Python Package
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on:
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release:
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types: [created]
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jobs:
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deploy:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/[email protected]
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- name: Set up Python
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uses: actions/[email protected]
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with:
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python-version: "3.x"
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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python -m pip install setuptools setuptools-scm wheel twine
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- name: Build and publish
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env:
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TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
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TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
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run: |
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python setup.py sdist bdist_wheel
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twine upload dist/*

‎.pre-commit-config.yaml

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# https://pre-commit.com/
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repos:
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: v4.0.1
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hooks:
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- id: trailing-whitespace
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- id: end-of-file-fixer
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- id: check-yaml
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# isort should run before black as black sometimes tweaks the isort output
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- repo: https://github.com/PyCQA/isort
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rev: 5.9.3
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hooks:
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- id: isort
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# https://github.com/python/black#version-control-integration
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- repo: https://github.com/psf/black
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rev: 21.7b0
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hooks:
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- id: black
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- repo: https://github.com/keewis/blackdoc
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rev: v0.3.4
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hooks:
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- id: blackdoc
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- repo: https://gitlab.com/pycqa/flake8
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rev: 3.9.2
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hooks:
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- id: flake8
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# - repo: https://github.com/Carreau/velin
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# rev: 0.0.8
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# hooks:
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# - id: velin
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# args: ["--write", "--compact"]
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- repo: https://github.com/pre-commit/mirrors-mypy
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rev: v0.910
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hooks:
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- id: mypy
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# Copied from setup.cfg
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exclude: "properties|asv_bench"
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additional_dependencies: [
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# Type stubs
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types-python-dateutil,
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types-pkg_resources,
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types-PyYAML,
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types-pytz,
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# Dependencies that are typed
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numpy,
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typing-extensions==3.10.0.0,
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]
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# run this occasionally, ref discussion https://github.com/pydata/xarray/pull/3194
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# - repo: https://github.com/asottile/pyupgrade
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# rev: v1.22.1
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# hooks:
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# - id: pyupgrade
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# args:
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# - "--py3-only"
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# # remove on f-strings in Py3.7
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# - "--keep-percent-format"

‎ci/environment.yml

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name: datatree
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channels:
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- conda-forge
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- nodefaults
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dependencies:
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- xarray >=0.19.0
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- netcdf4
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- anytree
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- pytest
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- flake8
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- black
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- codecov
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- pytest-cov

‎datatree/_version.py

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__version__ = "0.1.dev9+g805d97f.d20210817"
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__version__ = "0.1.dev46+g415cbb7.d20210825"

‎dev-requirements.txt

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pytest
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flake8
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black
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codecov
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pytest-cov
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-r requirements.txt

‎requirements.txt

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xarray>=0.19.0
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netcdf4
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anytree
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future

‎setup.py

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from os.path import exists
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from setuptools import find_packages, setup
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install_requires = [
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"xarray>=0.19.0",
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"netcdf4"
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"anytree",
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"future",
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]
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extras_require = {'tests':
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[
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"pytest",
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"flake8",
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"black",
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"codecov",
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]
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}
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with open('requirements.txt') as f:
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install_requires = f.read().strip().split('\n')
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if exists('README.rst'):
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with open('README.rst') as f:
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long_description = f.read()
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else:
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long_description = ''
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setup(
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name="datatree",
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description="Hierarchical tree-like data structures for xarray",
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long_description=long_description,
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url="https://github.com/TomNicholas/datatree",
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author="Thomas Nicholas",
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author_email="[email protected]",
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"Topic :: Scientific/Engineering",
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"License :: OSI Approved :: Apache License",
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"Operating System :: OS Independent",
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"Programming Language :: Python :: 3",
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"Programming Language :: Python :: 3.7",
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"Programming Language :: Python :: 3.8",
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"Programming Language :: Python :: 3.9",
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],
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packages=find_packages(exclude=["docs", "tests", "tests.*", "docs.*"]),
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install_requires=install_requires,
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extras_require=extras_require,
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python_requires=">=3.7",
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setup_requires="setuptools_scm",
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use_scm_version={

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