Update website to preCICE v3

.github/workflows/deploy.yml

@@ -30,6 +30,10 @@ jobs:
           ref: main
           path: main
 
+      - name: Patch doxyfiles
+        working-directory: website
+        run: doxygen/patch.sh
+
       - name: Install dependencies
         run: |
           sudo apt-get -yyq update

.github/workflows/testing.yml

@@ -30,6 +30,10 @@ jobs:
           ref: main
           path: main
 
+      - name: Patch doxyfiles
+        working-directory: website
+        run: doxygen/patch.sh
+
       - name: Install dependencies
         run: |
           sudo apt-get -yyq update
@@ -71,7 +75,7 @@ jobs:
       - name: Deploy to testing
         uses: peaceiris/actions-gh-pages@v3
         with:
-          github_token: ${{ secrets.JEKYLL_PAT }}
+          personal_token: ${{ secrets.WEB_TESTING_TOKEN }}
           publish_dir: ./public
           external_repository: precice/website-testing
           publish_branch: main

_config.yml

@@ -38,6 +38,7 @@ exclude:
   - pdf/
   - createtag
   - pdf-docs.sh
+  - doxygen/
 # these are the files and directories that jekyll will exclude from the build
 
 feedback_subject_line: XXX
@@ -229,16 +230,21 @@ subprojects:
   - imported/tutorials/partitioned-heat-conduction
   - imported/tutorials/partitioned-heat-conduction-complex
   - imported/tutorials/partitioned-heat-conduction-direct
+  - imported/tutorials/partitioned-heat-conduction-overlap
   - imported/tutorials/oscillator
+  - imported/tutorials/oscillator-overlap
   - imported/tutorials/perpendicular-flap
   - imported/tutorials/turek-hron-fsi3
   - imported/tutorials/partitioned-pipe
+  - imported/tutorials/partitioned-pipe-two-phase
   - imported/tutorials/partitioned-backwards-facing-step
   - imported/tutorials/flow-over-heated-plate-partitioned-flow
   - imported/tutorials/volume-coupled-diffusion
+  - imported/tutorials/volume-coupled-flow
   - imported/tutorials/channel-transport
   - imported/tutorials/channel-transport-reaction
   - imported/tutorials/aste-turbine
+  - imported/tutorials/two-scale-heat-conduction
   - imported/tutorials/tools/tests
   - imported/openfoam-adapter/docs
   - imported/micro-manager/docs
@@ -248,7 +254,7 @@ subprojects:
 # We use these versions to centrally update links
 # and other version-specific information.
 # Note that Jekyll cuts off trailing zeros: https://stackoverflow.com/questions/37862167/trailing-zeros-in-jekyll-liquid
-precice_version: 2.5.0
+precice_version: 3.0.0
 calculix_version: "2.20"
 calculix_adapter_version: "2.20.0"
 

_data/sidebars/docs_sidebar.yml

@@ -3,7 +3,7 @@
 entries:
 - title: sidebar
   product: Docs
-  version: v2.5.0
+  version: v3.0.0
   folders:
 
   - title:

_data/sidebars/tutorial_sidebar.yml

@@ -70,6 +70,10 @@ entries:
       url: /tutorials-partitioned-heat-conduction-direct.html
       output: web
 
+    - title: Partitioned heat conduction overlap
+      url: /tutorials-partitioned-heat-conduction-overlap.html
+      output: web
+
     - title: Partitioned elastic beam
       url: /tutorials-partitioned-elastic-beam.html
       output: web
@@ -78,6 +82,10 @@ entries:
       url: /tutorials-partitioned-pipe.html
       output: web
 
+    - title: Partitioned pipe two-phase
+      url: /tutorials-partitioned-pipe-two-phase.html
+      output: web
+
     - title: Partitioned flow over a step
       url: /tutorials-partitioned-backwards-facing-step.html
       output: web
@@ -90,6 +98,10 @@ entries:
       url: /tutorials-oscillator.html
       output: web
 
+    - title: Oscillator overlap
+      url: /tutorials-oscillator-overlap.html
+      output: web
+
     - title: ASTE turbine
       url: /tutorials-aste-turbine.html
       output: web
@@ -98,10 +110,18 @@ entries:
       url: /tutorials-volume-coupled-diffusion.html
       output: web
 
+    - title: Volume-coupled flow 
+      url: /tutorials-volume-coupled-flow.html
+      output: web
+
     - title: Channel transport
       url: /tutorials-channel-transport.html
       output: web
 
     - title: Channel transport reaction
       url: /tutorials-channel-transport-reaction.html
       output: web
+
+    - title: Two-scale heat conduction
+      url: /tutorials-two-scale-heat-conduction.html
+      output: web