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Merged
merged 5 commits into from
Feb 20, 2025
Merged

Support Python 3.13 #1199

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b6a7bdb
Try Python 3.13
maresb Feb 9, 2025
1796612
Remove conda-forge cpython build tags
maresb Feb 18, 2025
e69df35
Remove special inclusion/exclusion cases.
ricardoV94 Feb 20, 2025
c572c38
Doctest modules are now opt-in and run in Python 3.12
ricardoV94 Feb 20, 2025
8b8b4ca
Fix bug in JAX test
ricardoV94 Feb 20, 2025
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53 changes: 22 additions & 31 deletions .github/workflows/test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -54,7 +54,7 @@ jobs:
if: ${{ needs.changes.outputs.changes == 'true' }}
strategy:
matrix:
python-version: ["3.10", "3.12"]
python-version: ["3.10", "3.13"]
steps:
- uses: actions/checkout@v4
with:
Expand All @@ -75,15 +75,14 @@ jobs:
fail-fast: false
matrix:
os: ["ubuntu-latest"]
python-version: ["3.10", "3.12"]
python-version: ["3.10", "3.13"]
numpy-version: ["~=1.26.0", ">=2.0"]
fast-compile: [0, 1]
float32: [0, 1]
install-numba: [0]
install-jax: [0]
install-torch: [0]
part:
- "--doctest-modules pytensor --ignore=pytensor/misc/check_duplicate_key.py --ignore=pytensor/link"
- "tests --ignore=tests/tensor --ignore=tests/scan --ignore=tests/sparse"
- "tests/scan"
- "tests/sparse"
Expand All @@ -98,23 +97,24 @@ jobs:
fast-compile: 1
- python-version: "3.10"
float32: 1
- python-version: "3.10"
part: "tests/tensor/test_math.py"
- fast-compile: 1
float32: 1
- part: "--doctest-modules pytensor --ignore=pytensor/misc/check_duplicate_key.py --ignore=pytensor/link"
float32: 1
- part: "--doctest-modules pytensor --ignore=pytensor/misc/check_duplicate_key.py --ignore=pytensor/link"
fast-compile: 1
- numpy-version: "~=1.26.0"
fast-compile: 1
- numpy-version: "~=1.26.0"
float32: 1
- numpy-version: "~=1.26.0"
python-version: "3.12"
- numpy-version: "~=1.26.0"
part: "--doctest-modules pytensor --ignore=pytensor/misc/check_duplicate_key.py --ignore=pytensor/link"
python-version: "3.13"
include:
- os: "ubuntu-latest"
part: "--doctest-modules pytensor --ignore=pytensor/misc/check_duplicate_key.py --ignore=pytensor/link"
python-version: "3.12"
numpy-version: ">=2.0"
fast-compile: 0
float32: 0
install-numba: 0
install-jax: 0
install-torch: 0
- install-numba: 1
os: "ubuntu-latest"
python-version: "3.10"
Expand All @@ -124,7 +124,7 @@ jobs:
part: "tests/link/numba"
- install-numba: 1
os: "ubuntu-latest"
python-version: "3.12"
python-version: "3.13"
numpy-version: "~=2.1.0"
fast-compile: 0
float32: 0
Expand All @@ -138,7 +138,7 @@ jobs:
part: "tests/link/jax"
- install-jax: 1
os: "ubuntu-latest"
python-version: "3.12"
python-version: "3.13"
numpy-version: ">=2.0"
fast-compile: 0
float32: 0
Expand All @@ -151,23 +151,14 @@ jobs:
float32: 0
part: "tests/link/pytorch"
- os: macos-15
python-version: "3.12"
python-version: "3.13"
numpy-version: ">=2.0"
fast-compile: 0
float32: 0
install-numba: 0
install-jax: 0
install-torch: 0
part: "tests/tensor/test_blas.py tests/tensor/test_elemwise.py tests/tensor/test_math_scipy.py"
- os: "ubuntu-latest"
python-version: "3.10"
numpy-version: "~=1.26.0"
fast-compile: 0
float32: 0
install-numba: 0
install-jax: 0
install-torch: 0
part: "tests/tensor/test_math.py"

steps:
- uses: actions/checkout@v4
Expand Down Expand Up @@ -198,13 +189,13 @@ jobs:
run: |

if [[ $OS == "macos-15" ]]; then
micromamba install --yes -q "python~=${PYTHON_VERSION}=*_cpython" "numpy${NUMPY_VERSION}" scipy pip graphviz cython pytest coverage pytest-cov pytest-benchmark pytest-mock libblas=*=*accelerate;
micromamba install --yes -q "python~=${PYTHON_VERSION}" "numpy${NUMPY_VERSION}" scipy pip graphviz cython pytest coverage pytest-cov pytest-benchmark pytest-mock libblas=*=*accelerate;
else
micromamba install --yes -q "python~=${PYTHON_VERSION}=*_cpython" mkl "numpy${NUMPY_VERSION}" scipy pip mkl-service graphviz cython pytest coverage pytest-cov pytest-benchmark pytest-mock;
micromamba install --yes -q "python~=${PYTHON_VERSION}" mkl "numpy${NUMPY_VERSION}" scipy pip mkl-service graphviz cython pytest coverage pytest-cov pytest-benchmark pytest-mock;
fi
if [[ $INSTALL_NUMBA == "1" ]]; then micromamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}=*_cpython" "numba>=0.57"; fi
if [[ $INSTALL_JAX == "1" ]]; then micromamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}=*_cpython" jax jaxlib numpyro && pip install tensorflow-probability; fi
if [[ $INSTALL_TORCH == "1" ]]; then micromamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}=*_cpython" pytorch pytorch-cuda=12.1 "mkl<=2024.0" -c pytorch -c nvidia; fi
if [[ $INSTALL_NUMBA == "1" ]]; then micromamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}" "numba>=0.57"; fi
if [[ $INSTALL_JAX == "1" ]]; then micromamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}" jax jaxlib numpyro && pip install tensorflow-probability; fi
if [[ $INSTALL_TORCH == "1" ]]; then micromamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}" pytorch pytorch-cuda=12.1 "mkl<=2024.0" -c pytorch -c nvidia; fi
pip install pytest-sphinx

pip install -e ./
Expand Down Expand Up @@ -269,7 +260,7 @@ jobs:
- name: Install dependencies
shell: micromamba-shell {0}
run: |
micromamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}=*_cpython" mkl numpy scipy pip mkl-service cython pytest "numba>=0.57" jax jaxlib pytest-benchmark
micromamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}" mkl numpy scipy pip mkl-service cython pytest "numba>=0.57" jax jaxlib pytest-benchmark
pip install -e ./
micromamba list && pip freeze
python -c 'import pytensor; print(pytensor.config.__str__(print_doc=False))'
Expand Down Expand Up @@ -322,7 +313,7 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
python-version: "3.13"

- name: Install dependencies
run: |
Expand Down
3 changes: 2 additions & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ build-backend = "setuptools.build_meta"
[project]
name = "pytensor"
dynamic = ['version']
requires-python = ">=3.10,<3.13"
requires-python = ">=3.10,<3.14"
authors = [{ name = "pymc-devs", email = "[email protected]" }]
description = "Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs."
readme = "README.rst"
Expand All @@ -33,6 +33,7 @@ classifiers = [
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
]

keywords = [
Expand Down
2 changes: 1 addition & 1 deletion tests/link/jax/test_tensor_basic.py
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Expand Up @@ -29,7 +29,7 @@ def test_jax_Alloc():
x = ptb.AllocEmpty("float32")(2, 3)

def compare_shape_dtype(x, y):
np.testing.assert_array_equal(x, y, strict=True)
assert x.shape == y.shape and x.dtype == y.dtype

compare_jax_and_py([], [x], [], assert_fn=compare_shape_dtype)

Expand Down