[maintenance] requirements upgrades

api/tests/Makefile

@@ -2,14 +2,16 @@
 
 ROOT_DIR  = $(abspath $(CURDIR)/../../)
 VENV_DIR ?= $(abspath $(ROOT_DIR)/.venv)
+UPGRADE_OPTION := $(if $(upgrade),--upgrade-package $(upgrade),--upgrade)
+
 
 .PHONY: all
 all: install tests
 
 .PHONY: reqs
 requirements.txt: requirements.in
 	# pip compiling $<
-	@$(VENV_DIR)/bin/pip-compile --output-file $@ $<
+	@$(VENV_DIR)/bin/pip-compile $(UPGRADE_OPTION) --build-isolation --output-file $@ $<
 
 reqs: requirements.txt ## alias to compile requirements.txt
 

api/tests/requirements.in

@@ -1,14 +1,12 @@
 
 # testing
-coverage==4.5.1 # TODO: Downgraded because of a bug https://github.com/nedbat/coveragepy/issues/716
-
-pytest~=5.3.5  # Bug in pytest-sugar https://github.com/Teemu/pytest-sugar/issues/187
+coverage
+pytest
 pytest-cov
 pytest-aiohttp
 pytest-instafail
 pytest-sugar
 
-
 # fixtures
 aiohttp
 openapi-core

api/tests/requirements.txt

@@ -8,10 +8,10 @@ aiohttp==3.6.2            # via -r requirements.in, pytest-aiohttp
 async-timeout==3.0.1      # via aiohttp
 attrs==19.3.0             # via aiohttp, jsonschema, openapi-core, pytest
 chardet==3.0.4            # via aiohttp
-coverage==4.5.1           # via -r requirements.in, pytest-cov
+coverage==5.1             # via -r requirements.in, pytest-cov
 idna-ssl==1.1.0           # via aiohttp
 idna==2.9                 # via idna-ssl, yarl
-importlib-metadata==1.5.0  # via jsonschema, pluggy, pytest
+importlib-metadata==1.6.0  # via jsonschema, pluggy, pytest
 isodate==0.6.0            # via openapi-schema-validator
 jsonschema==3.2.0         # via openapi-schema-validator, openapi-spec-validator
 lazy-object-proxy==1.4.3  # via openapi-core
@@ -24,20 +24,20 @@ packaging==20.3           # via pytest, pytest-sugar
 parse==1.15.0             # via openapi-core
 pluggy==0.13.1            # via pytest
 py==1.8.1                 # via pytest
-pyparsing==2.4.6          # via packaging
-pyrsistent==0.15.7        # via jsonschema
+pyparsing==2.4.7          # via packaging
+pyrsistent==0.16.0        # via jsonschema
 pytest-aiohttp==0.3.0     # via -r requirements.in
 pytest-cov==2.8.1         # via -r requirements.in
 pytest-instafail==0.4.1.post0  # via -r requirements.in
-pytest-sugar==0.9.2       # via -r requirements.in
-pytest==5.3.5             # via -r requirements.in, pytest-aiohttp, pytest-cov, pytest-instafail, pytest-sugar
-pyyaml==5.3               # via openapi-spec-validator
+pytest-sugar==0.9.3       # via -r requirements.in
+pytest==5.4.2             # via -r requirements.in, pytest-aiohttp, pytest-cov, pytest-instafail, pytest-sugar
+pyyaml==5.3.1             # via openapi-spec-validator
 six==1.14.0               # via isodate, jsonschema, openapi-core, openapi-schema-validator, openapi-spec-validator, packaging
 strict-rfc3339==0.7       # via openapi-schema-validator
 termcolor==1.1.0          # via pytest-sugar
-typing-extensions==3.7.4.1  # via aiohttp
-wcwidth==0.1.8            # via pytest
-werkzeug==1.0.0           # via openapi-core
+typing-extensions==3.7.4.2  # via aiohttp
+wcwidth==0.1.9            # via pytest
+werkzeug==1.0.1           # via openapi-core
 yarl==1.4.2               # via aiohttp
 zipp==3.1.0               # via importlib-metadata
 

packages/postgres-database/requirements/_migration.in

@@ -4,7 +4,6 @@
 # frozen specs
 -r _base.txt
 
-certifi==2019.11.28 # added contraint to fit pre-installation of jupyter/base-notebook:python-3.7.3 (cannot uninstall)
 urllib3>=1.25.8    # Vulnerability
 
 alembic

packages/postgres-database/requirements/_migration.txt

@@ -5,7 +5,7 @@
 #    pip-compile --output-file=requirements/_migration.txt requirements/_migration.in
 #
 alembic==1.4.2            # via -r requirements/_migration.in
-certifi==2019.11.28       # via -r requirements/_migration.in, requests
+certifi==2020.4.5.1       # via requests
 chardet==3.0.4            # via requests
 click==7.1.2              # via -r requirements/_migration.in
 docker==4.2.0             # via -r requirements/_migration.in

packages/postgres-database/requirements/_test.txt

@@ -10,14 +10,14 @@ alembic==1.4.2            # via -r requirements/_migration.txt
 astroid==2.4.1            # via pylint
 async-timeout==3.0.1      # via aiohttp
 attrs==19.3.0             # via aiohttp, pytest, pytest-docker
-certifi==2019.11.28       # via -r requirements/_migration.txt, requests
+certifi==2020.4.5.1       # via -r requirements/_migration.txt, requests
 chardet==3.0.4            # via -r requirements/_migration.txt, aiohttp, requests
 click==7.1.2              # via -r requirements/_migration.txt
 coverage==5.1             # via -r requirements/_test.in, coveralls, pytest-cov
 coveralls==2.0.0          # via -r requirements/_test.in
 docker==4.2.0             # via -r requirements/_migration.txt
 docopt==0.6.2             # via coveralls
-faker==4.0.3              # via -r requirements/_test.in
+faker==4.1.0              # via -r requirements/_test.in
 idna-ssl==1.1.0           # via aiohttp
 idna==2.9                 # via -r requirements/_migration.txt, requests, yarl
 importlib-metadata==1.6.0  # via pluggy, pytest

services/web/server/requirements/_base.txt

@@ -13,7 +13,7 @@ aiohttp-swagger[performance]==1.0.14  # via -r requirements/_base.in
 aiohttp==3.6.2            # via -r requirements/../../../../packages/service-library/requirements/_base.in, aiohttp-jinja2, aiohttp-security, aiohttp-session, aiohttp-swagger, aiozipkin
 aiopg[sa]==1.0.0          # via -r requirements/../../../../packages/service-library/requirements/_base.in, -r requirements/_base.in
 aioredis==1.3.1           # via -r requirements/_base.in
-aiormq==3.2.1             # via aio-pika
+aiormq==3.2.2             # via aio-pika
 aiosmtplib==1.1.3         # via -r requirements/_base.in
 aiozipkin==0.6.0          # via -r requirements/../../../../packages/service-library/requirements/_base.in
 amqp==2.5.2               # via kombu

services/web/server/requirements/_test.txt

@@ -13,7 +13,7 @@ aiohttp-swagger[performance]==1.0.14  # via -r requirements/_base.txt
 aiohttp==3.6.2            # via -r requirements/_base.txt, aiohttp-jinja2, aiohttp-security, aiohttp-session, aiohttp-swagger, aiozipkin, pytest-aiohttp
 aiopg[sa]==1.0.0          # via -r requirements/_base.txt
 aioredis==1.3.1           # via -r requirements/_base.txt
-aiormq==3.2.1             # via -r requirements/_base.txt, aio-pika
+aiormq==3.2.2             # via -r requirements/_base.txt, aio-pika
 aiosmtplib==1.1.3         # via -r requirements/_base.txt
 aiozipkin==0.6.0          # via -r requirements/_base.txt
 amqp==2.5.2               # via -r requirements/_base.txt, kombu
@@ -34,7 +34,7 @@ cryptography==2.9.2       # via -r requirements/_base.txt, aiohttp-session
 docker==4.2.0             # via -r requirements/_test.in
 docopt==0.6.2             # via coveralls
 expiringdict==1.2.0       # via -r requirements/_base.txt
-faker==4.0.3              # via -r requirements/_test.in
+faker==4.1.0              # via -r requirements/_test.in
 hiredis==1.0.1            # via -r requirements/_base.txt, aioredis
 idna-ssl==1.1.0           # via -r requirements/_base.txt, aiohttp
 idna==2.9                 # via -r requirements/_base.txt, idna-ssl, requests, yarl
@@ -80,7 +80,7 @@ python-engineio==3.12.1   # via -r requirements/_base.txt, python-socketio
 python-socketio==4.5.1    # via -r requirements/_base.txt
 pytz==2020.1              # via -r requirements/_base.txt, celery
 pyyaml==5.3.1             # via -r requirements/_base.txt, aiohttp-swagger, openapi-spec-validator
-redis==3.5.0              # via -r requirements/_test.in
+redis==3.5.1              # via -r requirements/_test.in
 requests==2.23.0          # via codecov, coveralls, docker
 semantic-version==2.8.5   # via -r requirements/_base.txt
 six==1.14.0               # via -r requirements/_base.txt, astroid, cryptography, docker, isodate, jsonschema, openapi-core, openapi-spec-validator, packaging, pyrsistent, python-dateutil, python-engineio, python-socketio, tenacity, websocket-client

tests/swarm-deploy/requirements/requirements.in

@@ -1,5 +1,5 @@
 aio-pika
-coverage==4.5.1 # TODO: Downgraded because of a bug https://github.com/nedbat/coveragepy/issues/716
+coverage
 pytest
 pytest-aiohttp
 pytest-cov

tests/swarm-deploy/requirements/requirements.txt

@@ -6,37 +6,37 @@
 #
 aio-pika==6.6.0           # via -r requirements/requirements.in
 aiohttp==3.6.2            # via pytest-aiohttp
-aiormq==3.2.1             # via aio-pika
+aiormq==3.2.2             # via aio-pika
 async-timeout==3.0.1      # via aiohttp
 attrs==19.3.0             # via aiohttp, pytest
-certifi==2019.11.28       # via requests
+certifi==2020.4.5.1       # via requests
 chardet==3.0.4            # via aiohttp, requests
-coverage==4.5.1           # via -r requirements/requirements.in, pytest-cov
+coverage==5.1             # via -r requirements/requirements.in, pytest-cov
 docker==4.2.0             # via -r requirements/requirements.in
 idna-ssl==1.1.0           # via aiohttp
 idna==2.9                 # via requests, yarl
-importlib-metadata==1.5.2  # via pluggy, pytest
+importlib-metadata==1.6.0  # via pluggy, pytest
 more-itertools==8.2.0     # via pytest
 multidict==4.7.5          # via aiohttp, yarl
 packaging==20.3           # via pytest, pytest-sugar
 pamqp==2.3.0              # via aiormq
 pluggy==0.13.1            # via pytest
 py==1.8.1                 # via pytest
-pyparsing==2.4.6          # via packaging
+pyparsing==2.4.7          # via packaging
 pytest-aiohttp==0.3.0     # via -r requirements/requirements.in
 pytest-cov==2.8.1         # via -r requirements/requirements.in
 pytest-instafail==0.4.1.post0  # via -r requirements/requirements.in
-pytest-mock==2.0.0        # via -r requirements/requirements.in
+pytest-mock==3.1.0        # via -r requirements/requirements.in
 pytest-runner==5.2        # via -r requirements/requirements.in
-pytest-sugar==0.9.2       # via -r requirements/requirements.in
+pytest-sugar==0.9.3       # via -r requirements/requirements.in
 pytest==5.4.2             # via -r requirements/requirements.in, pytest-aiohttp, pytest-cov, pytest-instafail, pytest-mock, pytest-sugar
 pyyaml==5.3.1             # via -r requirements/requirements.in
 requests==2.23.0          # via docker
 six==1.14.0               # via docker, packaging, tenacity, websocket-client
-tenacity==6.1.0           # via -r requirements/requirements.in
+tenacity==6.2.0           # via -r requirements/requirements.in
 termcolor==1.1.0          # via pytest-sugar
-typing-extensions==3.7.4.1  # via aiohttp
-urllib3==1.25.8           # via requests
+typing-extensions==3.7.4.2  # via aiohttp
+urllib3==1.25.9           # via requests
 wcwidth==0.1.9            # via pytest
 websocket-client==0.57.0  # via docker
 yarl==1.4.2               # via aio-pika, aiohttp, aiormq