Align with Fractal 1.3

[tcompa]

No description provided.

[tcompa]

Examples 01 and 02 are now working with the latest Fractal versions

• fractal-server 1.3.0a2
• fractal 1.3.0a0

[tcompa]

Example 01 now works with the latest Fractal versions

fractal-server 1.3.0a5
fractal 1.3.0a3
fractal-tasks-core 0.10.0a2

[tcompa]

Example 01 ran correctly with fractal-tasks-core 0.10.0a4:

2023-06-15 15:37:18,455 - WF1_job1 - INFO - Start execution of workflow "Workflow cardiac-test-3"; more logs at /home/tommaso/Fractal/fractal-demos/examples/server/artifacts/proj_0000001_wf_0000001_job_0000001/workflow.log
2023-06-15 15:37:18,455 - WF1_job1 - DEBUG - fractal_server.__VERSION__: 1.3.0a5
2023-06-15 15:37:18,455 - WF1_job1 - DEBUG - FRACTAL_RUNNER_BACKEND: local
2023-06-15 15:37:18,455 - WF1_job1 - DEBUG - slurm_user: None
2023-06-15 15:37:18,455 - WF1_job1 - DEBUG - worker_init: None
2023-06-15 15:37:18,456 - WF1_job1 - DEBUG - input metadata: {}
2023-06-15 15:37:18,456 - WF1_job1 - DEBUG - input_paths: ['/home/tommaso/Fractal/fractal-demos/examples/01_cardio_tiny_dataset/../images/10.5281_zenodo.7059515/']
2023-06-15 15:37:18,456 - WF1_job1 - DEBUG - output_path: /home/tommaso/Fractal/fractal-demos/examples/01_cardio_tiny_dataset/output_cardiac-test-3
2023-06-15 15:37:18,458 - WF1_job1 - DEBUG - job.id: 1
2023-06-15 15:37:18,458 - WF1_job1 - DEBUG - job.working_dir: /home/tommaso/Fractal/fractal-demos/examples/server/artifacts/proj_0000001_wf_0000001_job_0000001
2023-06-15 15:37:18,458 - WF1_job1 - DEBUG - job.workflow_dir_user: /home/tommaso/Fractal/fractal-demos/examples/server/artifacts/proj_0000001_wf_0000001_job_0000001
2023-06-15 15:37:18,458 - WF1_job1 - DEBUG - START workflow "Workflow cardiac-test-3"
2023-06-15 15:37:18,460 - WF1_job1 - DEBUG - SUBMIT 0-th task (name="Create OME-Zarr structure")
2023-06-15 15:37:20,147 - WF1_job1 - DEBUG - END    0-th task (name="Create OME-Zarr structure")
2023-06-15 15:37:20,147 - WF1_job1 - DEBUG - SUBMIT 1-th task (name="Convert Yokogawa to OME-Zarr")
2023-06-15 15:37:22,244 - WF1_job1 - DEBUG - END    1-th task (name="Convert Yokogawa to OME-Zarr")
2023-06-15 15:37:22,244 - WF1_job1 - DEBUG - SUBMIT 2-th task (name="Copy OME-Zarr structure")
2023-06-15 15:37:23,664 - WF1_job1 - DEBUG - END    2-th task (name="Copy OME-Zarr structure")
2023-06-15 15:37:23,665 - WF1_job1 - DEBUG - SUBMIT 3-th task (name="Maximum Intensity Projection")
2023-06-15 15:37:25,229 - WF1_job1 - DEBUG - END    3-th task (name="Maximum Intensity Projection")
2023-06-15 15:37:25,229 - WF1_job1 - DEBUG - SUBMIT 4-th task (name="Cellpose Segmentation")
2023-06-15 15:37:35,533 - WF1_job1 - DEBUG - END    4-th task (name="Cellpose Segmentation")
2023-06-15 15:37:35,533 - WF1_job1 - DEBUG - SUBMIT 5-th task (name="Napari workflows wrapper")
2023-06-15 15:37:38,081 - WF1_job1 - DEBUG - END    5-th task (name="Napari workflows wrapper")
2023-06-15 15:37:38,083 - WF1_job1 - INFO - End execution of workflow "Workflow cardiac-test-3"; more logs at /home/tommaso/Fractal/fractal-demos/examples/server/artifacts/proj_0000001_wf_0000001_job_0000001/workflow.log
2023-06-15 15:37:38,083 - WF1_job1 - DEBUG - END workflow "Workflow cardiac-test-3"

[tcompa]

Merging this one, so that we can move on with independent PRs.